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LOC4347774 protein DETOXIFICATION 45, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347774, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4347774
Gene description
protein DETOXIFICATION 45, chloroplastic
Locus tag
OSNPB_090548300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in milk grains (RPKM 50.6), roots after flowering (RPKM 18.2) and 6 other tissues See more
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Genomic context

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See LOC4347774 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26125276..26131521)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21681132..21687507)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase 6 Neighboring gene chitin elicitor-binding protein-like Neighboring gene probable flavin-containing monooxygenase 1 Neighboring gene probable purine permease 11 Neighboring gene probable flavin-containing monooxygenase 1 Neighboring gene uncharacterized LOC107278898

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein DETOXIFICATION 45, chloroplastic
Names
OSJNBa0038K02.39
Os09g0548300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    26125276..26131521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066304287.1 → XP_066160384.1  protein DETOXIFICATION 45, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A0P0XQP1

  2. XM_015756796.3 → XP_015612282.1  protein DETOXIFICATION 45, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A0P0XQP1, B8BE48
    Conserved Domains (1) summary
    cd13136
    Location:122 → 555
    MATE_DinF_like; DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

  3. XM_015756798.3 → XP_015612284.1  protein DETOXIFICATION 45, chloroplastic isoform X3

    UniProtKB/TrEMBL
    B8BE48
    Conserved Domains (2) summary
    cd13136
    Location:122 → 554
    MATE_DinF_like; DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins
    TIGR00797
    Location:130 → 481
    matE; putative efflux protein, MATE family

  4. XM_015756797.3 → XP_015612283.1  protein DETOXIFICATION 45, chloroplastic isoform X2

    UniProtKB/TrEMBL
    B8BE48
    Conserved Domains (1) summary
    cd13136
    Location:121 → 554
    MATE_DinF_like; DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

  5. XM_066304288.1 → XP_066160385.1  protein DETOXIFICATION 45, chloroplastic isoform X4

Nucleotide Protein
Heading Accession and Version

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