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SPCFV_gp5 coat protein [ Sweet potato chlorotic fleck virus ]

Gene ID: 5076276, updated on 18-Aug-2023

Summary

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Gene symbol
SPCFV_gp5
Gene description
coat protein
Locus tag
SPCFV_gp5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sweet potato chlorotic fleck virus (acronym: SPCFV)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus
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Genomic context

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Sequence:
NC_006550.1 (7768..8667)

NC_006550.1Genomic Context describing neighboring genes Neighboring gene triple gene block protein 1 Neighboring gene triple gene block protein 2 Neighboring gene triple gene block protein 3 Neighboring gene nucleic acid binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006550.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence analysis of the entire RNA genome of a sweet potato chlorotic fleck virus isolate reveals that it belongs to a distinct carlavirus species. Aritua V, et al. Arch Virol, 2007. PMID 17187295

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coat protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006550.1 Reference assembly

    Range
    7768..8667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_164262.1 coat protein [Sweet potato chlorotic fleck virus]

    See identical proteins and their annotated locations for YP_164262.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7SL34, Q5L4G2
    Conserved Domains (2) summary
    pfam08358
    Location:50 → 99
    Flexi_CP_N; Carlavirus coat
    pfam00286
    Location:108 → 251
    Flexi_CP; Viral coat protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases