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PLXNB1 plexin B1 [ Homo sapiens (human) ]

Gene ID: 5364, updated on 10-Dec-2024

Summary

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Official Symbol
PLXNB1provided by HGNC
Official Full Name
plexin B1provided by HGNC
Primary source
HGNC:HGNC:9103
See related
Ensembl:ENSG00000164050 MIM:601053; AllianceGenome:HGNC:9103
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SEP; PLXN5; PLEXIN-B1
Summary
Enables semaphorin receptor activity. Involved in several processes, including negative regulation of cell adhesion; regulation of cell shape; and semaphorin-plexin signaling pathway. Located in plasma membrane. Part of semaphorin receptor complex. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in skin (RPKM 13.8), kidney (RPKM 13.0) and 24 other tissues See more
Orthologs
mouse all
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Genomic context

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See PLXNB1 in Genome Data Viewer
Location:
3p21.31
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (48403854..48430310, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (48431864..48458348, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (48445261..48471495, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor Kazal type 8 (putative) Neighboring gene microRNA 2115 Neighboring gene MPRA-validated peak4639 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:48399605-48400105 Neighboring gene F-box and WD repeat domain containing 12 Neighboring gene RNA, 7SL, cytoplasmic 321, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14326 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14327 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48471449-48472442 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:48473797-48474996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48476193-48477035 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14328 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19828 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14330 Neighboring gene coiled-coil domain containing 51 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14331 Neighboring gene ATRIP-TREX1 readthrough Neighboring gene translation machinery associated 7 homolog Neighboring gene ATR interacting protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19829 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48507557-48508438 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:48508439-48509318 Neighboring gene three prime repair exonuclease 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Plexin-B1 signalling promotes androgen receptor translocation to the nucleus. Williamson M, et al. Oncogene, 2016 Feb 25. PMID 25982277
  2. 1H, 15N and 13C Resonance assignments and secondary structure determination reveal that the minimal Rac1 GTPase binding domain of plexin-B1 has a ubiquitin fold. Tong Y, et al. J Biomol NMR, 2005 Apr. PMID 15929008, Free PMC Article
  3. A dual binding mode for RhoGTPases in plexin signalling. Bell CH, et al. PLoS Biol, 2011 Aug. PMID 21912513, Free PMC Article
  4. Role of Plexin B1 in a Breast Cancer Cohort of Pakistani Patients and its Contribution Towards Cancer Metastasis as Indicated by an In Vitro Model. Malik MFA, et al. Anticancer Res, 2017 Aug. PMID 28739743
  5. Plexin-Bs enhance their GAP activity with a novel activation switch loop generating a cooperative enzyme. Li ZL, et al. Cell Mol Life Sci, 2021 Feb. PMID 32601713, Free PMC Article

See all (95) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PLXNB1/SEMA4D signals mediate interactions between malignant epithelial and immune cells to promote colorectal cancer liver metastasis.
    Title: PLXNB1/SEMA4D signals mediate interactions between malignant epithelial and immune cells to promote colorectal cancer liver metastasis.
  2. Semaphorin4A promotes lung cancer by activation of NF-kappaB pathway mediated by PlexinB1.
    Title: Semaphorin4A promotes lung cancer by activation of NF-κB pathway mediated by PlexinB1.
  3. Neurite outgrowth deficits caused by rare PLXNB1 mutation in pediatric bipolar disorder.
    Title: Neurite outgrowth deficits caused by rare PLXNB1 mutation in pediatric bipolar disorder.
  4. PLXNB1 mutations in the etiology of idiopathic hypogonadotropic hypogonadism.
    Title: PLXNB1 mutations in the etiology of idiopathic hypogonadotropic hypogonadism.
  5. Sema4D/Plexin-B1 promotes the progression of osteosarcoma cells by activating Pyk2-PI3K-AKT pathway.
    Title: Sema4D/Plexin-B1 promotes the progression of osteosarcoma cells by activating Pyk2-PI3K-AKT pathway.
  6. Plexin-Bs enhance their GAP activity with a novel activation switch loop generating a cooperative enzyme.
    Title: Plexin-Bs enhance their GAP activity with a novel activation switch loop generating a cooperative enzyme.
  7. PlexinB1 Promotes Nuclear Translocation of the Glucocorticoid Receptor.
    Title: PlexinB1 Promotes Nuclear Translocation of the Glucocorticoid Receptor.
  8. Sema4D/PlexinB1 promotes endothelial differentiation of dental pulp stem cells via activation of AKT and ERK1/2 signaling.
    Title: Sema4D/PlexinB1 promotes endothelial differentiation of dental pulp stem cells via activation of AKT and ERK1/2 signaling.
  9. Decreased expression of sema4D and Plexin-B1 may be responsible for the deficiency in Met signalling and the development of preeclampsia.
    Title: Transactivation of Met signalling by semaphorin4D in human placenta: implications for the pathogenesis of preeclampsia.
  10. Plexin-B1 level showed a significant positive correlation both with overall survival and disease free survival of Caucasian breast cancer patients
    Title: Association between prognosis and SEMA4D/Plexin-B1 expression in various malignancies: A meta-analysis.
Submit: New GeneRIF Correction See all GeneRIFs (58)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA0407, MGC149167

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTPase activating protein binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables GTPase activator activity TAS
Traceable Author Statement
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables semaphorin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables semaphorin receptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables semaphorin receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables semaphorin receptor activity TAS
Traceable Author Statement
more info
 PubMed 
enables semaphorin receptor binding TAS
Traceable Author Statement
more info
 PubMed 
enables transmembrane signaling receptor activity NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in inhibitory synapse assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in intracellular signal transduction NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in negative regulation of cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of cell adhesion IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of osteoblast proliferation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in neuron projection morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in ossification involved in bone maturation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of Rho protein signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of axonogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of cell shape IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of cell shape IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of cytoskeleton organization IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in semaphorin-plexin signaling pathway IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in synapse assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
  
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
  
part_of semaphorin receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of semaphorin receptor complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of semaphorin receptor complex ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of semaphorin receptor complex TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
plexin-B1
Names
plexin 5
semaphorin receptor SEP

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130082.3 → NP_001123554.1  plexin-B1 precursor

    See identical proteins and their annotated locations for NP_001123554.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AB007867, AC134772, BC066773
    Consensus CDS
    CCDS2765.1
    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
    Related
    ENSP00000296440.6, ENST00000296440.11
    Conserved Domains (10) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:681 → 839
    PHA03247; large tegument protein UL36; Provisional
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2102
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:541 → 627
    TIG_plexin; TIG domain
    pfam18020
    Location:921 → 1020
    TIG_2; TIG domain found in plexin

  2. NM_002673.6 → NP_002664.2  plexin-B1 precursor

    See identical proteins and their annotated locations for NP_002664.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AB007867, AC134772, BC066773
    Consensus CDS
    CCDS2765.1
    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
    Related
    ENSP00000351338.4, ENST00000358536.8
    Conserved Domains (10) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:681 → 839
    PHA03247; large tegument protein UL36; Provisional
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2102
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:541 → 627
    TIG_plexin; TIG domain
    pfam18020
    Location:921 → 1020
    TIG_2; TIG domain found in plexin

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    48403854..48430310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047448333.1 → XP_047304289.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  2. XM_011533835.2 → XP_011532137.1  plexin-B1 isoform X1

    See identical proteins and their annotated locations for XP_011532137.1

    Conserved Domains (8) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2103
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl26464
    Location:681 → 839
    Atrophin-1; Atrophin-1 family

  3. XM_047448335.1 → XP_047304291.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  4. XM_011533836.2 → XP_011532138.1  plexin-B1 isoform X1

    See identical proteins and their annotated locations for XP_011532138.1

    Conserved Domains (8) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2103
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl26464
    Location:681 → 839
    Atrophin-1; Atrophin-1 family

  5. XM_011533833.3 → XP_011532135.1  plexin-B1 isoform X1

    See identical proteins and their annotated locations for XP_011532135.1

    Conserved Domains (8) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2103
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl26464
    Location:681 → 839
    Atrophin-1; Atrophin-1 family

  6. XM_047448331.1 → XP_047304287.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  7. XM_017006630.2 → XP_016862119.1  plexin-B1 isoform X1

    Conserved Domains (8) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2103
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl26464
    Location:681 → 839
    Atrophin-1; Atrophin-1 family

  8. XM_047448332.1 → XP_047304288.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  9. XM_011533837.2 → XP_011532139.1  plexin-B1 isoform X1

    See identical proteins and their annotated locations for XP_011532139.1

    Conserved Domains (8) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2103
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl26464
    Location:681 → 839
    Atrophin-1; Atrophin-1 family

  10. XM_011533834.2 → XP_011532136.1  plexin-B1 isoform X1

    See identical proteins and their annotated locations for XP_011532136.1

    Conserved Domains (8) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2103
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl26464
    Location:681 → 839
    Atrophin-1; Atrophin-1 family

  11. XM_047448334.1 → XP_047304290.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  12. XM_047448330.1 → XP_047304286.1  plexin-B1 isoform X1

  13. XM_017006631.2 → XP_016862120.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
    Conserved Domains (10) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:681 → 839
    PHA03247; large tegument protein UL36; Provisional
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2102
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:541 → 627
    TIG_plexin; TIG domain
    pfam18020
    Location:921 → 1020
    TIG_2; TIG domain found in plexin

  14. XM_024453600.2 → XP_024309368.1  plexin-B1 isoform X1

    Conserved Domains (8) summary
    cd11275
    Location:28 → 480
    Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:1162 → 1249
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:1070 → 1161
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1252 → 1376
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 527
    PSI; Plexin repeat
    pfam08337
    Location:1562 → 2103
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl26464
    Location:681 → 839
    Atrophin-1; Atrophin-1 family

  15. XM_047448336.1 → XP_047304292.1  plexin-B1 isoform X3

RNA

  1. XR_007095694.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    48431864..48458348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054346894.1 → XP_054202869.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  2. XM_054346890.1 → XP_054202865.1  plexin-B1 isoform X1

  3. XM_054346896.1 → XP_054202871.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  4. XM_054346891.1 → XP_054202866.1  plexin-B1 isoform X1

  5. XM_054346897.1 → XP_054202872.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  6. XM_054346885.1 → XP_054202860.1  plexin-B1 isoform X1

  7. XM_054346893.1 → XP_054202868.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  8. XM_054346887.1 → XP_054202862.1  plexin-B1 isoform X1

  9. XM_054346892.1 → XP_054202867.1  plexin-B1 isoform X1

  10. XM_054346886.1 → XP_054202861.1  plexin-B1 isoform X1

  11. XM_054346889.1 → XP_054202864.1  plexin-B1 isoform X1

  12. XM_054346888.1 → XP_054202863.1  plexin-B1 isoform X1

  13. XM_054346895.1 → XP_054202870.1  plexin-B1 isoform X2

    UniProtKB/Swiss-Prot
    A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93

  14. XM_054346898.1 → XP_054202873.1  plexin-B1 isoform X3

RNA

  1. XR_008486736.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O43157.3 GenPept UniProtKB/Swiss-Prot:O43157

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