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Ccdc91 coiled-coil domain containing 91 [ Mus musculus (house mouse) ]

Gene ID: 67015, updated on 9-Dec-2024

Summary

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Official Symbol
Ccdc91provided by MGI
Official Full Name
coiled-coil domain containing 91provided by MGI
Primary source
MGI:MGI:1914265
See related
Ensembl:ENSMUSG00000030301 AllianceGenome:MGI:1914265
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
p56; 1700086G08Rik; 1810060J02Rik
Summary
Predicted to be involved in Golgi to lysosome transport. Predicted to be located in Golgi apparatus and nucleoplasm. Predicted to be active in trans-Golgi network. Is expressed in central nervous system; genitourinary system; retina; and vibrissa. Orthologous to human CCDC91 (coiled-coil domain containing 91). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in testis adult (RPKM 109.4), adrenal adult (RPKM 9.3) and 11 other tissues See more
Orthologs
human all
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Genomic context

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See Ccdc91 in Genome Data Viewer
Location:
6 G3; 6 78.22 cM
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (147377322..147534110)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (147475871..147632613)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene parathyroid hormone-like peptide Neighboring gene ribosomal protein L5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_17824 Neighboring gene STARR-positive B cell enhancer ABC_E3693 Neighboring gene predicted gene 6288 Neighboring gene predicted gene, 36244 Neighboring gene RIKEN cDNA 1700049E15 gene Neighboring gene predicted gene 15762

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Analysis of Gga null mice demonstrates a non-redundant role for mammalian GGA2 during development. Govero J, et al. PLoS One, 2012. PMID 22291915, Free PMC Article
  2. Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development. Combes AN, et al. Dev Dyn, 2009 May. PMID 19334288, Free PMC Article
  3. Protein-protein interaction panel using mouse full-length cDNAs. Suzuki H, et al. Genome Res, 2001 Oct. PMID 11591653, Free PMC Article
  4. Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors. Kim H, et al. Cell, 2018 Dec 13. PMID 30550785, Free PMC Article
  5. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in Golgi to lysosome transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi to lysosome transport ISO
Inferred from Sequence Orthology
more info
  
involved_in Golgi to lysosome transport ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
  
located_in trans-Golgi network ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 91
Names
GGA-binding partner

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355713.1 → NP_001342642.1  coiled-coil domain-containing protein 91 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC132614, AC152952, BC049073
    Consensus CDS
    CCDS20707.1
    UniProtKB/Swiss-Prot
    Q8R3N8, Q9D8L5, Q9D9E8
    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:130 → 442
    DUF5401; Family of unknown function (DUF5401)

  2. NM_001355714.1 → NP_001342643.1  coiled-coil domain-containing protein 91 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC132614, AC152952, BC049073
    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:100 → 412
    DUF5401; Family of unknown function (DUF5401)

  3. NM_001355715.1 → NP_001342644.1  coiled-coil domain-containing protein 91 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC132614, AC152952, BC049073
    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:100 → 412
    DUF5401; Family of unknown function (DUF5401)

  4. NM_025911.2 → NP_080187.2  coiled-coil domain-containing protein 91 isoform 1

    See identical proteins and their annotated locations for NP_080187.2

    Status: VALIDATED

    Source sequence(s)
    AK007017, AK007917, CO038888
    Consensus CDS
    CCDS20707.1
    UniProtKB/Swiss-Prot
    Q8R3N8, Q9D8L5, Q9D9E8
    UniProtKB/TrEMBL
    Q0P6I6
    Related
    ENSMUSP00000032441.7, ENSMUST00000032441.14
    Conserved Domains (1) summary
    pfam17380
    Location:130 → 442
    DUF5401; Family of unknown function (DUF5401)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    147377322..147534110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036152268.1 → XP_036008161.1  coiled-coil domain-containing protein 91 isoform X2

    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:100 → 412
    DUF5401; Family of unknown function (DUF5401)

  2. XM_036152266.1 → XP_036008159.1  coiled-coil domain-containing protein 91 isoform X1

    UniProtKB/Swiss-Prot
    Q8R3N8, Q9D8L5, Q9D9E8
    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:130 → 442
    DUF5401; Family of unknown function (DUF5401)

  3. XM_006507076.3 → XP_006507139.1  coiled-coil domain-containing protein 91 isoform X1

    See identical proteins and their annotated locations for XP_006507139.1

    UniProtKB/Swiss-Prot
    Q8R3N8, Q9D8L5, Q9D9E8
    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:130 → 442
    DUF5401; Family of unknown function (DUF5401)

  4. XM_036152267.1 → XP_036008160.1  coiled-coil domain-containing protein 91 isoform X1

    UniProtKB/Swiss-Prot
    Q8R3N8, Q9D8L5, Q9D9E8
    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:130 → 442
    DUF5401; Family of unknown function (DUF5401)

  5. XM_030255551.2 → XP_030111411.1  coiled-coil domain-containing protein 91 isoform X2

    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:100 → 412
    DUF5401; Family of unknown function (DUF5401)

  6. XM_006507078.4 → XP_006507141.1  coiled-coil domain-containing protein 91 isoform X2

    See identical proteins and their annotated locations for XP_006507141.1

    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:100 → 412
    DUF5401; Family of unknown function (DUF5401)

  7. XM_006507080.4 → XP_006507143.1  coiled-coil domain-containing protein 91 isoform X2

    See identical proteins and their annotated locations for XP_006507143.1

    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:100 → 412
    DUF5401; Family of unknown function (DUF5401)

  8. XM_006507079.5 → XP_006507142.1  coiled-coil domain-containing protein 91 isoform X2

    See identical proteins and their annotated locations for XP_006507142.1

    UniProtKB/TrEMBL
    Q0P6I6
    Conserved Domains (1) summary
    pfam17380
    Location:100 → 412
    DUF5401; Family of unknown function (DUF5401)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D8L5.2 GenPept UniProtKB/Swiss-Prot:Q9D8L5

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