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RPS11B [ Saccharomyces cerevisiae S288C ]

Gene ID: 852337, updated on 11-Sep-2024

Summary

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Official Symbol
RPS11B
Primary source
SGD:S000000252
Locus tag
YBR048W
See related
AllianceGenome:SGD:S000000252; FungiDB:YBR048W; VEuPathDB:YBR048W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
A structural constituent of ribosome. Involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_001134.8 (332831..333812)

Chromosome II - NC_001134.8Genomic Context describing neighboring genes Neighboring gene NADPH:quinone reductase Neighboring gene Fmp23p Neighboring gene DNA-binding protein REB1 Neighboring gene protein phosphatase regulator REG2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001134.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reduced dosage of genes encoding ribosomal protein S18 suppresses a mitochondrial initiation codon mutation in Saccharomyces cerevisiae. Folley LS, et al. Genetics, 1994 Jun. PMID 8070651, Free PMC Article
  2. Global nucleosome occupancy in yeast. Bernstein BE, et al. Genome Biol, 2004. PMID 15345046, Free PMC Article
  3. A determination of the identity elements in yeast 18 S ribosomal RNA for the recognition of ribosomal protein YS11: the role of the kink-turn motif in helix 11. Dresios J, et al. J Mol Biol, 2005 Jan 28. PMID 15588818
  4. Genetic and biochemical characterization of antisuppressor mutants in the yeast Saccharomyces cerevisiae. Ishiguro J. Curr Genet, 1981 Dec. PMID 24185993
  5. Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription. Morillon A, et al. Mol Cell, 2005 Jun 10. PMID 15949446

See all (81) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in ribosomal small subunit assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of 90S preribosome HDA PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal 40S subunit protein S11B
NP_009604.1
  • Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S11 and bacterial S17; RPS11B has a paralog, RPS11A, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001134.8 Reference assembly

    Range
    332831..333812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001178396.1 → NP_009604.1  TPA: ribosomal 40S subunit protein S11B [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_009604.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VQ48, O11852, P0CX47, P0CX48, P26781
    UniProtKB/TrEMBL
    A6ZKZ2, B3LGP0, C7GLX2, C8Z4U5, G2W954, N1P4H4
    Conserved Domains (1) summary
    PTZ00241
    Location:4 → 156
    PTZ00241; 40S ribosomal protein S11; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CX47.1
P0CX48.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials
Miscellaneous