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LOC9266134 protein Brevis radix-like 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9266134, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9266134
Gene description
protein Brevis radix-like 1
Locus tag
OSNPB_090444500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1123_B08.9; OJ1123_B08.10
Expression
Biased expression in roots before flowering (RPKM 9.2), flowers (RPKM 4.8) and 3 other tissues See more
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Genomic context

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See LOC9266134 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20932896..20938219)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16552518..16558082)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein BIG GRAIN 1-like Neighboring gene phospholipid:diacylglycerol acyltransferase 1 Neighboring gene uncharacterized LOC4347193 Neighboring gene uncharacterized LOC4347194

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein Brevis radix-like 1
Names
Os09g0444500
P0046G12.52
major intrinsic protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    20932896..20938219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756960.3 → XP_015612446.1  protein Brevis radix-like 1

    UniProtKB/TrEMBL
    B8BCG7, B9G3W5
    Conserved Domains (2) summary
    pfam08381
    Location:367 → 422
    BRX; Transcription factor regulating root and shoot growth via Pin3
    pfam13713
    Location:39 → 70
    BRX_N; Transcription factor BRX N-terminal domain
Nucleotide Protein
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