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    CCHCR1 coiled-coil alpha-helical rod protein 1 [ Homo sapiens (human) ]

    Gene ID: 54535, updated on 10-Dec-2024

    Summary

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    Official Symbol
    CCHCR1provided by HGNC
    Official Full Name
    coiled-coil alpha-helical rod protein 1provided by HGNC
    Primary source
    HGNC:HGNC:13930
    See related
    Ensembl:ENSG00000204536 MIM:605310; AllianceGenome:HGNC:13930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HCR; SBP; pg8; C6orf18
    Summary
    This gene encodes a protein with five coiled-coil alpha-helical rod domains that is thought to act as a regulator of mRNA metabolism through its interaction with mRNA-decapping protein 4. It localizes to P-bodies, the site of mRNA metabolism, with an N-terminus that is required for this subcellular localization, suggesting it is a P-body component. Naturally occurring mutations in this gene are associated with psoriasis. [provided by RefSeq, May 2017]
    Annotation information
    Note: This gene has been reviewed for its involvement in coronavirus biology, and is locus in the vicinity of disease-associated variant(s).
    Expression
    Broad expression in testis (RPKM 37.2), prostate (RPKM 4.5) and 18 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See CCHCR1 in Genome Data Viewer
    Location:
    6p21.33
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (31142439..31158197, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (31010125..31025917, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (31110216..31125974, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene psoriasis susceptibility 1 candidate 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:31105363-31106343 Neighboring gene psoriasis susceptibility 1 candidate 2 Neighboring gene RNA polymerase II subunit L pseudogene 1 Neighboring gene OCT4 hESC enhancer GRCh37_chr6:31123471-31124086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:31124820-31125320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:31125321-31125821 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:31127045-31127228 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr6:31128969-31129952 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr6:31129953-31130936 Neighboring gene transcription factor 19 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr6:31132319-31132900 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr6:31135533-31136390 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:31136391-31137248 Neighboring gene POU class 5 homeobox 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:31137249-31138106 Neighboring gene POU5F1 5' regulatory region

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Segregation of nascent GPCRs in the ER-to-Golgi transport by CCHCR1 via direct interaction. Xu X, et al. J Cell Sci, 2024 Feb 1. PMID 38230433,
    2. Psoriasis-associated genetic polymorphism in North Indian population in the CCHCR1 gene and in a genomic segment flanking the HLA-C region. Gandhi G, et al. Dis Markers, 2011. PMID 22182809, Free PMC Article
    3. Centrosomal localization of the psoriasis candidate gene product, CCHCR1, supports a role in cytoskeletal organization. Tervaniemi MH, et al. PLoS One, 2012. PMID 23189171, Free PMC Article
    4. The CCHCR1 (HCR) gene is relevant for skin steroidogenesis and downregulated in cultured psoriatic keratinocytes. Tiala I, et al. J Mol Med (Berl), 2007 Jun. PMID 17221218
    5. Mapping and identifying genes for asthma and psoriasis. Kere J. Philos Trans R Soc Lond B Biol Sci, 2005 Aug 29. PMID 16096103, Free PMC Article

    See all (75) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Segregation of nascent GPCRs in the ER-to-Golgi transport by CCHCR1 via direct interaction.
      Title: Segregation of nascent GPCRs in the ER-to-Golgi transport by CCHCR1 via direct interaction.
    2. Identification of protein/mRNA network involving the PSORS1 locus gene CCHCR1 and the PSORS4 locus gene HAX1.
      Title: Identification of protein/mRNA network involving the PSORS1 locus gene CCHCR1 and the PSORS4 locus gene HAX1.
    3. Alopecia areata susceptibility variant in MHC region impacts expressions of genes contributing to hair keratinization and is involved in hair loss.
      Title: Alopecia areata susceptibility variant in MHC region impacts expressions of genes contributing to hair keratinization and is involved in hair loss.
    4. A Genome-Wide Association Study Identifies Two Novel Susceptible Regions for Squamous Cell Carcinoma of the Head and Neck.
      Title: A Genome-Wide Association Study Identifies Two Novel Susceptible Regions for Squamous Cell Carcinoma of the Head and Neck.
    5. psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes
      Title: Intracellular signalling pathways and cytoskeletal functions converge on the psoriasis candidate gene CCHCR1 expressed at P-bodies and centrosomes.
    6. CCHCR1 interacts specifically with the E2 protein of human papillomavirus type 16 on a surface overlapping BRD4 binding
      Title: CCHCR1 interacts specifically with the E2 protein of human papillomavirus type 16 on a surface overlapping BRD4 binding.
    7. Confocal imaging confirmed the localization of CCHCR1 in P-bodies.
      Title: CCHCR1 interacts with EDC4, suggesting its localization in P-bodies.
    8. The centrosomal localization of CCHCR1 provides a connection to the abnormal cell proliferation and offers a link to possible cellular pathways altered in psoriasis.
      Title: Centrosomal localization of the psoriasis candidate gene product, CCHCR1, supports a role in cytoskeletal organization.
    9. Psoriasis is associated with genetic polymorphism in the CCHCR1 gene and in a genomic segment flanking the HLA-C region in the North Indian population.
      Title: Psoriasis-associated genetic polymorphism in North Indian population in the CCHCR1 gene and in a genomic segment flanking the HLA-C region.
    10. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
      Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
    Submit: New GeneRIF Correction See all GeneRIFs (17)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.
    EBI GWAS Catalog
    A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.
    EBI GWAS Catalog
    Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.
    EBI GWAS Catalog
    Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.
    EBI GWAS Catalog
    Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.
    EBI GWAS Catalog
    GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.
    EBI GWAS Catalog
    Multiple loci are associated with white blood cell phenotypes.
    EBI GWAS Catalog
    Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC126371, MGC126372

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in centriole IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in centriole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil alpha-helical rod protein 1
    Names
    HCR (a-helix coiled-coil rod homologue)
    StAR-binding protein
    alpha-helical coiled-coil rod protein
    putative gene 8 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_054878.1 RefSeqGene

      Range
      5437..20800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001105563.3 → NP_001099033.1  coiled-coil alpha-helical rod protein 1 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AL662844
      Consensus CDS
      CCDS47397.1
      UniProtKB/TrEMBL
      A0A1U9X7G4, A0A1U9X7G6, A0A1U9X7G7, A0A1U9X7H0
      Related
      ENSP00000401039.2, ENST00000451521.6
      Conserved Domains (1) summary
      cl25732
      Location:85 → 826
      SMC_N; RecF/RecN/SMC N terminal domain

    2. NM_001105564.2 → NP_001099034.1  coiled-coil alpha-helical rod protein 1 isoform 1

      Status: REVIEWED

      Source sequence(s)
      AL662844
      Consensus CDS
      CCDS43445.1
      UniProtKB/TrEMBL
      A0A0G2JP87
      Related
      ENSP00000379566.3, ENST00000396268.8
      Conserved Domains (2) summary
      pfam07111
      Location:116 → 862
      HCR; Alpha helical coiled-coil rod protein (HCR)
      cl19219
      Location:309 → 390
      DUF342; Protein of unknown function (DUF342)

    3. NM_001394641.1 → NP_001381570.1  coiled-coil alpha-helical rod protein 1 isoform 4

      Status: REVIEWED

      Source sequence(s)
      AL662844
      UniProtKB/TrEMBL
      A0A0G2JP87
      Conserved Domains (1) summary
      pfam07111
      Location:125 → 871
      HCR; Alpha helical coiled-coil rod protein (HCR)

    4. NM_001394642.1 → NP_001381571.1  coiled-coil alpha-helical rod protein 1 isoform 3

      Status: REVIEWED

      Source sequence(s)
      AL662844
      Consensus CDS
      CCDS4695.1
      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    5. NM_001394643.1 → NP_001381572.1  coiled-coil alpha-helical rod protein 1 isoform 3

      Status: REVIEWED

      Source sequence(s)
      AL662844
      Consensus CDS
      CCDS4695.1
      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    6. NM_001394644.1 → NP_001381573.1  coiled-coil alpha-helical rod protein 1 isoform 3

      Status: REVIEWED

      Source sequence(s)
      AL662844
      Consensus CDS
      CCDS4695.1
      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Related
      ENSP00000379561.2, ENST00000396263.6
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    7. NM_001394646.1 → NP_001381575.1  coiled-coil alpha-helical rod protein 1 isoform 5

      Status: REVIEWED

      Source sequence(s)
      AL662844
      UniProtKB/TrEMBL
      Q6IAC8
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 770
      HCR; Alpha helical coiled-coil rod protein (HCR)

    8. NM_001394647.1 → NP_001381576.1  coiled-coil alpha-helical rod protein 1 isoform 6

      Status: REVIEWED

      Source sequence(s)
      AL662844
      UniProtKB/TrEMBL
      Q0EFB6, Q2L6G6
      Conserved Domains (1) summary
      pfam07111
      Location:1 → 747
      HCR; Alpha helical coiled-coil rod protein (HCR)

    9. NM_001394648.1 → NP_001381577.1  coiled-coil alpha-helical rod protein 1 isoform 7

      Status: REVIEWED

      Source sequence(s)
      AL662844
      UniProtKB/TrEMBL
      Q2TB68
      Conserved Domains (1) summary
      pfam07111
      Location:1 → 737
      HCR; Alpha helical coiled-coil rod protein (HCR)

    10. NM_001394649.1 → NP_001381578.1  coiled-coil alpha-helical rod protein 1 isoform 8

      Status: REVIEWED

      Source sequence(s)
      AL662844
      UniProtKB/TrEMBL
      Q0EFB6
      Conserved Domains (1) summary
      pfam07111
      Location:1 → 654
      HCR; Alpha helical coiled-coil rod protein (HCR)

    11. NM_019052.4 → NP_061925.2  coiled-coil alpha-helical rod protein 1 isoform 3

      See identical proteins and their annotated locations for NP_061925.2

      Status: REVIEWED

      Source sequence(s)
      AA356205, AB112474, AB112475, AK000533, BC110534, DC357362
      Consensus CDS
      CCDS4695.1
      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Related
      ENSP00000365442.5, ENST00000376266.9
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      31142439..31158197 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017010969.2 → XP_016866458.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      Q2TB68
      Conserved Domains (1) summary
      pfam07111
      Location:1 → 737
      HCR; Alpha helical coiled-coil rod protein (HCR)

    2. XM_017010968.2 → XP_016866457.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    3. XM_047418911.1 → XP_047274867.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      Q2TB68

    4. XM_011514705.2 → XP_011513007.1  coiled-coil alpha-helical rod protein 1 isoform X2

      See identical proteins and their annotated locations for XP_011513007.1

      UniProtKB/TrEMBL
      Q2TB68
      Conserved Domains (1) summary
      pfam07111
      Location:1 → 737
      HCR; Alpha helical coiled-coil rod protein (HCR)

    5. XM_017010966.2 → XP_016866455.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    6. XM_047418908.1 → XP_047274864.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8

    7. XM_017010964.2 → XP_016866453.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    8. XM_047418910.1 → XP_047274866.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8

    9. XM_047418909.1 → XP_047274865.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8

    10. XM_017010963.2 → XP_016866452.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8
      Conserved Domains (1) summary
      pfam07111
      Location:27 → 773
      HCR; Alpha helical coiled-coil rod protein (HCR)

    11. XM_011514702.3 → XP_011513004.1  coiled-coil alpha-helical rod protein 1 isoform X5

      See identical proteins and their annotated locations for XP_011513004.1

      UniProtKB/TrEMBL
      A0A1U9X7G4, A0A1U9X7G7, A0A1U9X7H0
      Conserved Domains (2) summary
      pfam07111
      Location:94 → 835
      HCR; Alpha helical coiled-coil rod protein (HCR)
      cl19219
      Location:282 → 363
      DUF342; Protein of unknown function (DUF342)

    12. XM_047418914.1 → XP_047274870.1  coiled-coil alpha-helical rod protein 1 isoform X4

    13. XM_047418913.1 → XP_047274869.1  coiled-coil alpha-helical rod protein 1 isoform X3

      Related
      ENST00000509552.5

    14. XM_047418912.1 → XP_047274868.1  coiled-coil alpha-helical rod protein 1 isoform X6

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      2624870..2640625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054329828.1 → XP_054185803.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    2. XM_054329826.1 → XP_054185801.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    3. XM_054329829.1 → XP_054185804.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    4. XM_054329827.1 → XP_054185802.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    5. XM_054329830.1 → XP_054185805.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      M1TIV4, Q2TB68

    6. XM_054329832.1 → XP_054185807.1  coiled-coil alpha-helical rod protein 1 isoform X4

    7. XM_054329831.1 → XP_054185806.1  coiled-coil alpha-helical rod protein 1 isoform X3

    Reference GRCh38.p14 ALT_REF_LOCI_3

    Genomic

    1. NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3

      Range
      2401761..2417517 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054330312.1 → XP_054186287.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    2. XM_054330310.1 → XP_054186285.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    3. XM_054330313.1 → XP_054186288.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    4. XM_054330311.1 → XP_054186286.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    5. XM_054330314.1 → XP_054186289.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      M1TIV4, Q2TB68

    6. XM_054330316.1 → XP_054186291.1  coiled-coil alpha-helical rod protein 1 isoform X4

    7. XM_054330315.1 → XP_054186290.1  coiled-coil alpha-helical rod protein 1 isoform X3

    Reference GRCh38.p14 ALT_REF_LOCI_4

    Genomic

    1. NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4

      Range
      2452954..2468732 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054330610.1 → XP_054186585.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      D2IYK9, Q2TB68

    2. XM_054330609.1 → XP_054186584.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      D2IYK9, Q2TB68

    3. XM_054330607.1 → XP_054186582.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      B0S7V6, Q6IAC8

    4. XM_054330608.1 → XP_054186583.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      B0S7V6, Q6IAC8

    5. XM_054330611.1 → XP_054186586.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      D2IYK9, Q2TB68

    6. XM_054330613.1 → XP_054186588.1  coiled-coil alpha-helical rod protein 1 isoform X4

    7. XM_054330612.1 → XP_054186587.1  coiled-coil alpha-helical rod protein 1 isoform X3

    Reference GRCh38.p14 ALT_REF_LOCI_5

    Genomic

    1. NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5

      Range
      2486567..2502346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054330830.1 → XP_054186805.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      D2IYK9, Q2TB68

    2. XM_054330829.1 → XP_054186804.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      D2IYK9, Q2TB68

    3. XM_054330827.1 → XP_054186802.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      B0S7V6, Q6IAC8

    4. XM_054330828.1 → XP_054186803.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      B0S7V6, Q6IAC8

    5. XM_054330831.1 → XP_054186806.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      D2IYK9, Q2TB68

    6. XM_054330833.1 → XP_054186808.1  coiled-coil alpha-helical rod protein 1 isoform X4

    7. XM_054330832.1 → XP_054186807.1  coiled-coil alpha-helical rod protein 1 isoform X3

    Reference GRCh38.p14 ALT_REF_LOCI_6

    Genomic

    1. NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6

      Range
      2400454..2416229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054331089.1 → XP_054187064.1  coiled-coil alpha-helical rod protein 1 isoform X8

      UniProtKB/TrEMBL
      B4DIA2, Q6IAC8

    2. XM_054331091.1 → XP_054187066.1  coiled-coil alpha-helical rod protein 1 isoform X9

      UniProtKB/TrEMBL
      Q2TB68

    3. XM_054331090.1 → XP_054187065.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      Q2TB68

    4. XM_054331087.1 → XP_054187062.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8

    5. XM_054331088.1 → XP_054187063.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2ABH6, E9PE84, Q2TB67, Q5SQ82, Q5STE9, Q8TD31, Q9NRK8, Q9NWY9, Q9NXJ4, Q9NXK3, Q9Y6W1, Q9Y6W2
      UniProtKB/TrEMBL
      Q6IAC8

    6. XM_054331086.1 → XP_054187061.1  coiled-coil alpha-helical rod protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1U9X7G4, A0A1U9X7G7, A0A1U9X7H0

    7. XM_054331085.1 → XP_054187060.1  coiled-coil alpha-helical rod protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A0G2JP87

    8. XM_054331093.1 → XP_054187068.1  coiled-coil alpha-helical rod protein 1 isoform X4

    9. XM_054331092.1 → XP_054187067.1  coiled-coil alpha-helical rod protein 1 isoform X6

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      31010125..31025917 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054355686.1 → XP_054211661.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    2. XM_054355696.1 → XP_054211671.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      M1TIV4, Q2TB68

    3. XM_054355695.1 → XP_054211670.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      M1TIV4, Q2TB68

    4. XM_054355687.1 → XP_054211662.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    5. XM_054355697.1 → XP_054211672.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      M1TIV4, Q2TB68

    6. XM_054355690.1 → XP_054211665.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    7. XM_054355685.1 → XP_054211660.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    8. XM_054355688.1 → XP_054211663.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    9. XM_054355693.1 → XP_054211668.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    10. XM_054355692.1 → XP_054211667.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    11. XM_054355689.1 → XP_054211664.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    12. XM_054355691.1 → XP_054211666.1  coiled-coil alpha-helical rod protein 1 isoform X1

      UniProtKB/TrEMBL
      M1T2K8, Q769H0

    13. XM_054355694.1 → XP_054211669.1  coiled-coil alpha-helical rod protein 1 isoform X2

      UniProtKB/TrEMBL
      M1TIV4, Q2TB68

    14. XM_054355700.1 → XP_054211675.1  coiled-coil alpha-helical rod protein 1 isoform X4

    15. XM_054355699.1 → XP_054211674.1  coiled-coil alpha-helical rod protein 1 isoform X3

    16. XM_054355698.1 → XP_054211673.1  coiled-coil alpha-helical rod protein 1 isoform X3

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001394645.1: Suppressed sequence

      Description
      NM_001394645.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8TD31.2 GenPept UniProtKB/Swiss-Prot:Q8TD31

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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