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    LOC4326488 importin subunit alpha-1b-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326488, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326488
    Gene description
    importin subunit alpha-1b-like
    Locus tag
    OSNPB_010343200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 14.2), flowers (RPKM 12.5) and 6 other tissues See more
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    Genomic context

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    See LOC4326488 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (13604650..13610648)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13560800..13566875)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene butanoate--CoA ligase AAE1 Neighboring gene uncharacterized LOC9269304 Neighboring gene GATA transcription factor 23 Neighboring gene uncharacterized LOC4326490

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NLS-bearing protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    importin subunit alpha-1b-like
    Names
    B1045F02.27
    Os01g0343200
    putative importin alpha 1b

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      13604650..13610648
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765876.3 → XP_015621362.1  importin subunit alpha-1b-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0V269, B9EWA3, Q5ZBD1
      Conserved Domains (5) summary
      COG5064
      Location:17 → 533
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      cd00020
      Location:112 → 233
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam01749
      Location:8 → 97
      IBB; Importin beta binding domain
      pfam16186
      Location:459 → 502
      Arm_3; Atypical Arm repeat
      sd00043
      Location:114 → 146
      ARM; armadillo repeat [structural motif]

    2. XM_015765878.3 → XP_015621364.1  importin subunit alpha-1b-like isoform X3

      Conserved Domains (2) summary
      COG5064
      Location:17 → 525
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:114 → 146
      ARM; armadillo repeat [structural motif]

    3. XM_015765877.3 → XP_015621363.1  importin subunit alpha-1b-like isoform X2

      Conserved Domains (2) summary
      COG5064
      Location:17 → 525
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:114 → 146
      ARM; armadillo repeat [structural motif]

    4. XM_015765879.3 → XP_015621365.1  importin subunit alpha-1b-like isoform X4

      Conserved Domains (3) summary
      cd00020
      Location:112 → 233
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam01749
      Location:12 → 97
      IBB; Importin beta binding domain
      sd00043
      Location:114 → 146
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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