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    LOC4330010 probable inactive histone-lysine N-methyltransferase SUVR2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330010, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330010
    Gene description
    probable inactive histone-lysine N-methyltransferase SUVR2
    Locus tag
    OSNPB_020621100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1234_B11.9; OJ1372_D06.34
    Expression
    Broad expression in flower buds (RPKM 2.3), flowers (RPKM 2.1) and 6 other tissues See more
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    Genomic context

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    See LOC4330010 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25190765..25200026)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24706682..24717318)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ammonium transporter 1 member 2-like Neighboring gene pentatricopeptide repeat-containing protein At1g33350 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene very-long-chain aldehyde decarbonylase GL1-4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inactive histone-lysine N-methyltransferase SUVR2
    Names
    Os02g0621100
    putative SET domain protein SUVR2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25190765..25200026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767909.3 → XP_015623395.1  probable inactive histone-lysine N-methyltransferase SUVR2

      UniProtKB/TrEMBL
      A0A0P0VM44, B8AFI2, Q0DZG6, Q6K9F7
      Conserved Domains (3) summary
      smart00317
      Location:572 → 711
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam05033
      Location:407 → 564
      Pre-SET; Pre-SET motif
      pfam10440
      Location:24 → 80
      WIYLD; Ubiquitin-binding WIYLD domain

    2. XM_015767908.3 → XP_015623394.1  probable inactive histone-lysine N-methyltransferase SUVR2

      UniProtKB/TrEMBL
      A0A0P0VM44, B8AFI2, Q0DZG6, Q6K9F7
      Conserved Domains (3) summary
      smart00317
      Location:572 → 711
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam05033
      Location:407 → 564
      Pre-SET; Pre-SET motif
      pfam10440
      Location:24 → 80
      WIYLD; Ubiquitin-binding WIYLD domain
    Nucleotide Protein
    Heading Accession and Version

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