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    LOC9268059 protein ARABIDILLO 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268059, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9268059
    Gene description
    protein ARABIDILLO 2
    Locus tag
    OSNPB_100522601
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 10.5), flower buds (RPKM 5.8) and 6 other tissues See more
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    Genomic context

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    See LOC9268059 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20954731..20959002)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20263237..20267614)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene F-box protein PP2-A13 Neighboring gene protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic Neighboring gene 2-oxoglutarate-Fe(II) type oxidoreductase hxnY Neighboring gene 2-oxoglutarate-Fe(II) type oxidoreductase hxnY-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ARABIDILLO 2
    Names
    Os10g0522601

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      20954731..20959002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759173.3 → XP_015614659.1  protein ARABIDILLO 2 isoform X1

      UniProtKB/TrEMBL
      B9G6P1
      Conserved Domains (2) summary
      PLN03200
      Location:229 → 533
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:374 → 411
      ARM; armadillo repeat [structural motif]

    2. XM_026020749.2 → XP_025876534.1  protein ARABIDILLO 2 isoform X3

      UniProtKB/TrEMBL
      B8BHX9, Q336Z5
      Conserved Domains (2) summary
      PLN03200
      Location:166 → 470
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:311 → 348
      ARM; armadillo repeat [structural motif]

    3. XM_015759176.3 → XP_015614662.1  protein ARABIDILLO 2 isoform X3

      UniProtKB/TrEMBL
      B8BHX9, Q336Z5
      Conserved Domains (2) summary
      PLN03200
      Location:166 → 470
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:311 → 348
      ARM; armadillo repeat [structural motif]

    4. XM_015759177.3 → XP_015614663.1  protein ARABIDILLO 2 isoform X3

      UniProtKB/TrEMBL
      B8BHX9, Q336Z5
      Conserved Domains (2) summary
      PLN03200
      Location:166 → 470
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:311 → 348
      ARM; armadillo repeat [structural motif]

    5. XM_015759175.3 → XP_015614661.1  protein ARABIDILLO 2 isoform X3

      UniProtKB/TrEMBL
      B8BHX9, Q336Z5
      Conserved Domains (2) summary
      PLN03200
      Location:166 → 470
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:311 → 348
      ARM; armadillo repeat [structural motif]

    6. XM_015759174.3 → XP_015614660.1  protein ARABIDILLO 2 isoform X2

      UniProtKB/TrEMBL
      B8BHX9, Q7G257, Q9AUY1
      Conserved Domains (2) summary
      PLN03200
      Location:181 → 485
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:326 → 363
      ARM; armadillo repeat [structural motif]

    7. XM_015759178.3 → XP_015614664.1  protein ARABIDILLO 2 isoform X3

      UniProtKB/TrEMBL
      B8BHX9, Q336Z5
      Conserved Domains (2) summary
      PLN03200
      Location:166 → 470
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:311 → 348
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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