U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    selenbp1 selenium binding protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 393542, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    selenbp1provided by ZNC
    Official Full Name
    selenium binding protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1436
    See related
    Ensembl:ENSDARG00000024717 AllianceGenome:ZFIN:ZDB-GENE-040426-1436
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    MTO; zgc:65844
    Summary
    Predicted to enable methanethiol oxidase activity and selenium binding activity. Predicted to be involved in protein transport. Predicted to be located in cytosol; membrane; and nucleus. Is expressed in several structures, including brain; cardiovascular system; digestive system; endoderm; and pleuroperitoneal region. Orthologous to human SELENBP1 (selenium binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See selenbp1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (38138256..38157299)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (38188176..38207267)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene si:dkey-23o4.6 Neighboring gene pogo transposable element derived with ZNF domain b Neighboring gene phosphatidylinositol 4-kinase, catalytic, beta Neighboring gene myosin IEb

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Protective Effects of Sal B on Oxidative Stress-Induced Aging by Regulating the Keap1/Nrf2 Signaling Pathway in Zebrafish. Li E, et al. Molecules, 2021 Aug 29. PMID 34500674, Free PMC Article
    2. Variation of DNA Methylome of Zebrafish Cells under Cold Pressure. Han B, et al. PLoS One, 2016. PMID 27494266, Free PMC Article
    3. Sex-specific transcriptional responses of the zebrafish (Danio rerio) brain selenoproteome to acute sodium selenite supplementation. Benner MJ, et al. Physiol Genomics, 2013 Aug 1. PMID 23737534, Free PMC Article
    4. Identification and expression of carbonic anhydrase 2, myosin regulatory light chain 2 and selenium-binding protein 1 in zebrafish Danio rerio: Implication for age-related biomarkers. Feng S, et al. Gene Expr Patterns, 2018 Sep. PMID 29738878
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC65844

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables methanethiol oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables selenium binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    methanethiol oxidase
    NP_956864.1
    XP_005158264.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200570.1 → NP_956864.1  methanethiol oxidase

      See identical proteins and their annotated locations for NP_956864.1

      Status: PROVISIONAL

      Source sequence(s)
      BC056590
      UniProtKB/Swiss-Prot
      Q6PHD9
      Conserved Domains (1) summary
      pfam05694
      Location:8 → 457
      SBP56; 56kDa selenium binding protein (SBP56)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      38138256..38157299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005158207.3 → XP_005158264.1  methanethiol oxidase isoform X1

      UniProtKB/TrEMBL
      A0A385NIE1, E9QB46
      Related
      ENSDARP00000116604.1, ENSDART00000131694.2
      Conserved Domains (1) summary
      pfam05694
      Location:8 → 473
      SBP56; 56kDa selenium binding protein (SBP56)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394969.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      112115..135091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PHD9.1 GenPept UniProtKB/Swiss-Prot:Q6PHD9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools