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    LOC4324276 probable aquaporin TIP4-3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324276, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324276
    Gene description
    probable aquaporin TIP4-3
    Locus tag
    OSNPB_010232000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TIP4-3
    Expression
    Biased expression in flowers (RPKM 46.2), flower buds (RPKM 7.2) and 1 other tissue See more
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    Genomic context

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    See LOC4324276 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7308620..7309793)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7297647..7298885)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325893 Neighboring gene uncharacterized LOC4325894 Neighboring gene probable aquaporin TIP4-2 Neighboring gene protein JINGUBANG

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables water channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in water transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aquaporin TIP4-3
    Names
    LOC_Os01g13120
    P0431F01.24
    Tonoplast intrinsic protein 4-3
    putative tonoplast membrane integral protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7308620..7309793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765952.3 → XP_015621438.1  probable aquaporin TIP4-3

      UniProtKB/Swiss-Prot
      A0A0P0V009, Q0JPB4, Q9LWR2
      UniProtKB/TrEMBL
      A2WMF5
      Conserved Domains (1) summary
      cl00200
      Location:3 → 248
      MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LWR2.1 GenPept UniProtKB/Swiss-Prot:Q9LWR2

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