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    LOC4344354 myb-related protein 340 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344354, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344354
    Gene description
    myb-related protein 340
    Locus tag
    OSNPB_070688200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_E04.133; OJ1165_F02.110
    Expression
    Broad expression in roots before flowering (RPKM 4.0), flower buds (RPKM 2.1) and 5 other tissues See more
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    Genomic context

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    See LOC4344354 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29476149..29477689)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29242072..29243751)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene galactinol synthase 2 Neighboring gene manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like Neighboring gene pentatricopeptide repeat-containing protein At1g13040, mitochondrial Neighboring gene importin subunit alpha-4 Neighboring gene nuclear poly(A) polymerase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myb-related protein 340
    Names
    MYB transcription factor
    Os07g0688200
    putative typical P-type R2R3 Myb protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29476149..29477689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789780.3 → XP_015645266.1  myb-related protein 340

      UniProtKB/TrEMBL
      A0A0P0XAJ9, A2YQ45, A3BNL6, Q0D3F9, Q8H5F5
      Conserved Domains (1) summary
      PLN03212
      Location:19 → 138
      PLN03212; Transcription repressor MYB5; Provisional
    Nucleotide Protein
    Heading Accession and Version

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