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    LOC4347497 leucine--tRNA ligase, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347497, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347497
    Gene description
    leucine--tRNA ligase, cytoplasmic
    Locus tag
    OSNPB_090503400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 27.7), leaves after flowering (RPKM 20.8) and 6 other tissues See more
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    Genomic context

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    See LOC4347497 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19472456..19477140)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene chloroplast envelope quinone oxidoreductase homolog Neighboring gene chloroplast envelope quinone oxidoreductase homolog Neighboring gene uncharacterized LOC4347498 Neighboring gene uncharacterized LOC112936364 Neighboring gene putative F-box/FBD/LRR-repeat protein At3g49040

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables leucine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leucyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine--tRNA ligase, cytoplasmic
    Names
    Os09g0503400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19472456..19477140
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756345.2 → XP_015611831.1  leucine--tRNA ligase, cytoplasmic

      UniProtKB/TrEMBL
      A0A0P0XP69, A3C0D8, Q0J0N6
      Conserved Domains (1) summary
      PLN02959
      Location:3 → 1086
      PLN02959; aminoacyl-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version

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