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    LOC4327709 protein TPR1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327709, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327709
    Gene description
    protein TPR1-like
    Locus tag
    OSNPB_010254100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TPR1; TPR2; ASPR2; OsTPR2; OsASPR2; OsJ_01134
    Expression
    Ubiquitous expression in roots before flowering (RPKM 57.6), leaves before flowering (RPKM 56.8) and 6 other tissues See more
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    Genomic context

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    See LOC4327709 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8432786..8442143, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8421056..8430280, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1 PLIP3, chloroplastic Neighboring gene GTP-binding protein SAR1A Neighboring gene peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial Neighboring gene putative pectinesterase/pectinesterase inhibitor 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice. Yoshida A, et al. Plant J, 2012 Apr. PMID 22136599
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TPR1
    Names
    ASP1-RELATED2
    LOC_Os01g15020
    OSNPB_010254100
    P0705D01.10-1
    Protein ASP1-RELATED 2
    Protein TPR1
    aberrant spikelet and panicle1-related 2
    putative CTV.2
    topless-related protein 1
    topless-related protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406414.1 → NP_001393343.1  protein TPR1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB638271, AP014957, CI341352, CI522620, CI593329
      UniProtKB/Swiss-Prot
      A0A0P0V0G9, Q5NBT9
      UniProtKB/TrEMBL
      A2WMZ2

    2. NM_001406415.1 → NP_001393344.1  protein TPR1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK111583, AP014957, CI341352, CI522620, CI593329
      UniProtKB/TrEMBL
      A2WMZ2
      Conserved Domains (5) summary
      smart00667
      Location:4 → 34
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:34 → 92
      CTLH; C-terminal to LisH motif
      PRK14951
      Location:203 → 310
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      sd00039
      Location:331 → 387
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:329 → 640
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8432786..8442143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762340.3 → XP_015617826.1  protein TPR1 isoform X1

      UniProtKB/TrEMBL
      A2WMZ2
      Conserved Domains (5) summary
      smart00667
      Location:4 → 34
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:34 → 92
      CTLH; C-terminal to LisH motif
      COG2319
      Location:306 → 607
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:326 → 382
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:324 → 635
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5NBT9.1 GenPept UniProtKB/Swiss-Prot:Q5NBT9

    Gene LinkOut

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