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    LOC4347796 cocosin 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347796, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347796
    Gene description
    cocosin 1
    Locus tag
    OSNPB_090552500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26336170..26337718, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21891808..21893285, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein kinase dsk1 Neighboring gene cocosin 1-like Neighboring gene cocosin 1 Neighboring gene NAC domain-containing protein 54-like Neighboring gene uncharacterized LOC136351773

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cocosin 1
    Names
    Os09g0552500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26336170..26337718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756018.3 → XP_015611504.1  cocosin 1

      UniProtKB/TrEMBL
      A0A0P0XQ36, B9G4Y6, Q0IZS6
      Conserved Domains (1) summary
      cl40423
      Location:211 → 347
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version

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