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    LOC4327260 uncharacterized WD repeat-containing protein C17D11.16 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327260, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327260
    Gene description
    uncharacterized WD repeat-containing protein C17D11.16
    Locus tag
    OSNPB_010924300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1033B05.5
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 24.1), mature seeds (RPKM 24.1) and 6 other tissues See more
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    Genomic context

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    See LOC4327260 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41106026..41110695, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40462990..40467754, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L27, chloroplastic-like Neighboring gene uncharacterized LOC4327259 Neighboring gene transcription factor TCP20 Neighboring gene protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized WD repeat-containing protein C17D11.16
    Names
    Os01g0924300
    P0592G05.29
    beta transducin-like protein HET-E2C-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41106026..41110695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790374.3 → XP_015645860.1  uncharacterized WD repeat-containing protein C17D11.16

      UniProtKB/TrEMBL
      A0A0P0VC81, B8A8G0, B9EVY6, Q5JJP8
      Conserved Domains (2) summary
      sd00039
      Location:267 → 304
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:201 → 478
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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