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    LOC9270227 prolamin PPROL 17D-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270227, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270227
    Gene description
    prolamin PPROL 17D-like
    Locus tag
    OSNPB_120269200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    prolamin
    Expression
    Biased expression in mature seeds (RPKM 3326.8) and milk grains (RPKM 2264.4) See more
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    Genomic context

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    See LOC9270227 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (9749874..9750607)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (9688975..9689689)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354849 Neighboring gene prolamin PPROL 17D-like Neighboring gene prolamin PPROL 17D Neighboring gene prolamin PPROL 17D-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nutrient reservoir activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prolamin PPROL 17D-like
    Names
    Os12g0269100
    Os12g0269200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      9749874..9750607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022255.2 → XP_025878040.1  prolamin PPROL 17D-like

      UniProtKB/Swiss-Prot
      P20698, Q2QUA8, Q9ZWJ7
      UniProtKB/TrEMBL
      A1YQF9, A1YQG0, Q0IP02
      Conserved Domains (1) summary
      cd00261
      Location:30 → 140
      AAI_SS; Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against ...
    Nucleotide Protein
    Heading Accession and Version

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