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    LOC4328326 ribulose bisphosphate carboxylase small chain clone 512 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328326, updated on 21-Jun-2023

    Summary

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    Gene symbol
    LOC4328326
    Gene description
    ribulose bisphosphate carboxylase small chain clone 512
    Locus tag
    OSNPB_020152400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0463E12.1
    Expression
    Broad expression in mature seeds (RPKM 82.6), milk grains (RPKM 55.8) and 5 other tissues See more
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    Genomic context

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    See LOC4328326 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2874947..2876178)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 35 Neighboring gene uncharacterized LOC112937931 Neighboring gene VIN3-like protein 2 Neighboring gene uncharacterized protein C23H3.12c

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Unusual small subunit that is not expressed in photosynthetic cells alters the catalytic properties of rubisco in rice. Morita K, et al. Plant Physiol, 2014 Jan. PMID 24254313, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RbcS1 was not expressed in leaf blade, a major photosynthetic organ in rice, but was expressed in leaf sheath, culm, anther, and root central cylinder.
      Title: Unusual small subunit that is not expressed in photosynthetic cells alters the catalytic properties of rubisco in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ribulose bisphosphate carboxylase small chain clone 512
    Names
    OSJNBa0050G13.33
    Os02g0152400
    putative ribulose 1,5-bisphosphate carboxylase small subunit
    ribulose bisphosphate carboxylase small chain, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2874947..2876178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768834.2 → XP_015624320.2  ribulose bisphosphate carboxylase small chain clone 512

      UniProtKB/TrEMBL
      B8AHT7, B9F2S4, Q67IU5, Q67UV8
      Conserved Domains (1) summary
      cl29940
      Location:42 → 170
      RbcS; Ribulose-1,5-bisphosphate carboxylase small subunit
    Nucleotide Protein
    Heading Accession and Version

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