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    LOC4339218 B2 protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339218, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339218
    Gene description
    B2 protein
    Locus tag
    OSNPB_050498700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 114.7), flowers (RPKM 98.6) and 6 other tissues See more
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    Genomic context

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    See LOC4339218 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24667491..24670156, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24552442..24555172, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein translation factor SUI1 homolog Neighboring gene uncharacterized LOC4339217 Neighboring gene uncharacterized LOC136351205 Neighboring gene uncharacterized LOC136356457 Neighboring gene uncharacterized LOC4339219 Neighboring gene probable serine/threonine-protein kinase PBL7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to endoplasmic reticulum stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B2 protein
    Names
    Os05g0498700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      24667491..24670156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784763.3 → XP_015640249.1  B2 protein

      UniProtKB/TrEMBL
      A0A0P0WPA4, B8AZL0, Q0DH08, Q6L4U7
      Conserved Domains (1) summary
      smart00767
      Location:179 → 310
      DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death

    2. XM_015784762.3 → XP_015640248.1  B2 protein

      UniProtKB/TrEMBL
      A0A0P0WPA4, B8AZL0, Q0DH08, Q6L4U7
      Conserved Domains (1) summary
      smart00767
      Location:179 → 310
      DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death
    Nucleotide Protein
    Heading Accession and Version

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