U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4343276 ATP-dependent DNA helicase SRS2-like protein At4g25120 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343276, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4343276
    Gene description
    ATP-dependent DNA helicase SRS2-like protein At4g25120
    Locus tag
    OSNPB_070492100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1218_C12.25
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4343276 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18563650..18576954, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18338212..18351649, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene monooxygenase 2 Neighboring gene nucleoside diphosphate kinase 1-like Neighboring gene ubiquitin-ribosomal protein eL40 fusion protein Neighboring gene uncharacterized LOC107281778 Neighboring gene uncharacterized LOC4343278

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in recombinational repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATP-dependent DNA helicase SRS2-like protein At4g25120
    Names
    Os07g0492100
    P0038F10.105
    putative ATP-dependent DNA helicase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18563650..18576954 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791763.3 → XP_015647249.1  ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X7

      UniProtKB/TrEMBL
      B8B686, B9FXB1, Q69V87, Q6ZHK2
      Conserved Domains (1) summary
      COG0210
      Location:285 → 974
      UvrD; Superfamily I DNA or RNA helicase [Replication, recombination and repair]

    2. XM_015791758.3 → XP_015647244.1  ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X3

      UniProtKB/TrEMBL
      B9FXB1
      Conserved Domains (3) summary
      COG0210
      Location:285 → 974
      UvrD; Superfamily I DNA or RNA helicase [Replication, recombination and repair]
      pfam00580
      Location:287 → 564
      UvrD-helicase; UvrD/REP helicase N-terminal domain
      pfam13538
      Location:880 → 943
      UvrD_C_2; UvrD-like helicase C-terminal domain

    3. XM_066312563.1 → XP_066168660.1  ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X6

      UniProtKB/TrEMBL
      B9FXB1

    4. XM_015791757.3 → XP_015647243.1  ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X2

      UniProtKB/TrEMBL
      B9FXB1
      Conserved Domains (3) summary
      COG0210
      Location:304 → 989
      UvrD; Superfamily I DNA or RNA helicase [Replication, recombination and repair]
      pfam00580
      Location:306 → 583
      UvrD-helicase; UvrD/REP helicase N-terminal domain
      pfam13538
      Location:899 → 962
      UvrD_C_2; UvrD-like helicase C-terminal domain

    5. XM_015791761.3 → XP_015647247.1  ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X5

      UniProtKB/TrEMBL
      B9FXB1
      Conserved Domains (3) summary
      COG0210
      Location:304 → 993
      UvrD; Superfamily I DNA or RNA helicase [Replication, recombination and repair]
      pfam00580
      Location:306 → 583
      UvrD-helicase; UvrD/REP helicase N-terminal domain
      pfam13538
      Location:899 → 962
      UvrD_C_2; UvrD-like helicase C-terminal domain

    6. XM_015791760.3 → XP_015647246.1  ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X4

      UniProtKB/TrEMBL
      B9FXB1
      Conserved Domains (3) summary
      COG0210
      Location:304 → 993
      UvrD; Superfamily I DNA or RNA helicase [Replication, recombination and repair]
      pfam00580
      Location:306 → 583
      UvrD-helicase; UvrD/REP helicase N-terminal domain
      pfam13538
      Location:899 → 962
      UvrD_C_2; UvrD-like helicase C-terminal domain

    7. XM_015791756.3 → XP_015647242.1  ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1

      UniProtKB/TrEMBL
      B9FXB1
      Conserved Domains (3) summary
      COG0210
      Location:304 → 993
      UvrD; Superfamily I DNA or RNA helicase [Replication, recombination and repair]
      pfam00580
      Location:306 → 583
      UvrD-helicase; UvrD/REP helicase N-terminal domain
      pfam13538
      Location:899 → 962
      UvrD_C_2; UvrD-like helicase C-terminal domain

    RNA

    1. XR_010742650.1 RNA Sequence

    2. XR_010742647.1 RNA Sequence

    3. XR_010742648.1 RNA Sequence

    4. XR_010742649.1 RNA Sequence

    5. XR_001547709.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials