U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4324386 probable peptide/nitrate transporter At3g43790 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324386, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4324386
    Gene description
    probable peptide/nitrate transporter At3g43790
    Locus tag
    OSNPB_010268100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 9.8), leaves before flowering (RPKM 7.4) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4324386 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9217314..9224720, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9204121..9211841, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase-like protein At5g23170 Neighboring gene calmodulin Neighboring gene uncharacterized LOC136354919 Neighboring gene DNA gyrase subunit B, chloroplastic/mitochondrial-like Neighboring gene uncharacterized LOC4326262 Neighboring gene protein MIZU-KUSSEI 1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable peptide/nitrate transporter At3g43790
    Names
    Os01g0268100
    P0011D01.24
    putative major facilitator superfamily antiporter

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      9217314..9224720 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770659.3 → XP_015626145.1  probable peptide/nitrate transporter At3g43790 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V192, B8AC81, B9EV46, Q0JNS4, Q5NBL6
      Conserved Domains (1) summary
      cd17330
      Location:43 → 425
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    2. XM_015770876.3 → XP_015626362.1  probable peptide/nitrate transporter At3g43790 isoform X3

      UniProtKB/TrEMBL
      B9EV46
      Conserved Domains (2) summary
      cd06174
      Location:1 → 104
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:1 → 335
      MFS_1; Major Facilitator Superfamily

    3. XM_015770719.3 → XP_015626205.1  probable peptide/nitrate transporter At3g43790 isoform X2

      UniProtKB/TrEMBL
      B9EV46
      Conserved Domains (1) summary
      cd17330
      Location:13 → 353
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    4. XM_015770796.3 → XP_015626282.1  probable peptide/nitrate transporter At3g43790 isoform X2

      UniProtKB/TrEMBL
      B9EV46
      Conserved Domains (1) summary
      cd17330
      Location:13 → 353
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials