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    LOC4342545 protein LIFEGUARD 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342545, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342545
    Gene description
    protein LIFEGUARD 2
    Locus tag
    OSNPB_070177200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1361_E02.101
    Expression
    Broad expression in flowers (RPKM 14.5), roots before flowering (RPKM 11.1) and 4 other tissues See more
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    Genomic context

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    See LOC4342545 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4147764..4149536, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4087453..4089080, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable ribose-5-phosphate isomerase 3, chloroplastic Neighboring gene uncharacterized LOC9266277 Neighboring gene MMS19 nucleotide excision repair protein homolog Neighboring gene protein LIFEGUARD 4 Neighboring gene uncharacterized LOC9269020

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LIFEGUARD 2
    Names
    Os07g0177200
    P0534H07.33
    putative z-protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4147764..4149536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791589.3 → XP_015647075.2  protein LIFEGUARD 2

      UniProtKB/TrEMBL
      B8B7P9, B9FVT5, Q0D884
      Conserved Domains (1) summary
      cl00473
      Location:40 → 257
      BI-1-like; BAX inhibitor (BI)-1/YccA-like protein family
    Nucleotide Protein
    Heading Accession and Version

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