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    LOC4328423 cullin-associated NEDD8-dissociated protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328423, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328423
    Gene description
    cullin-associated NEDD8-dissociated protein 1
    Locus tag
    OSNPB_020167700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 34.4), flowers (RPKM 29.3) and 6 other tissues See more
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    Genomic context

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    See LOC4328423 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3668369..3678394, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3659305..3669323, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355130 Neighboring gene auxin-responsive protein SAUR71 Neighboring gene urease accessory protein F Neighboring gene 4-hydroxyphenylpyruvate dioxygenase Neighboring gene transcription factor HHO5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in SCF complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cullin-associated NEDD8-dissociated protein 1
    Names
    OSJNBa0085K21.46
    Os02g0167700
    putative TIP120 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3668369..3678394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307778.1 → XP_066163875.1  cullin-associated NEDD8-dissociated protein 1

    2. XM_015770893.3 → XP_015626379.1  cullin-associated NEDD8-dissociated protein 1

      UniProtKB/TrEMBL
      B8AIH4, B9F386, Q6H4V4
      Conserved Domains (3) summary
      sd00044
      Location:810 → 837
      HEAT; HEAT repeat [structural motif]
      pfam08623
      Location:1052 → 1202
      TIP120; TATA-binding protein interacting (TIP20)
      pfam13646
      Location:928 → 1030
      HEAT_2; HEAT repeats
    Nucleotide Protein
    Heading Accession and Version

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