LOC4323988 trafficking protein particle complex subunit 1 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4323988
Gene description: trafficking protein particle complex subunit 1
Locus tag: OSNPB_010513700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in leaves after flowering (RPKM 26.4), leaves before flowering (RPKM 26.3) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (18701502..18704502, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (18135286..18138330, complement)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of TRAPP complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: trafficking protein particle complex subunit 1

Names: Os01g0513700; P0504D03.30-1; P0504D03.30-2; putative trafficking protein particle complex 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001428042.1 → NP_001414971.1 trafficking protein particle complex subunit 1

Status: VALIDATED

Source sequence(s)

AK058445

UniProtKB/TrEMBL

A0A0P0V388, A0A9K3Y7E4, B8A8Y2, B9EX70, Q9AWN0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089035.1 Reference ASM3414082v1 Primary Assembly

Range

18701502..18704502 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015769387.3 → XP_015624873.1 trafficking protein particle complex subunit 1 isoform X1

UniProtKB/TrEMBL

A0A0P0V389, B8A8Y2, B9EX70, Q5QNC8

Conserved Domains (1) summary

pfam04099
Location:33 → 179

Sybindin; Sybindin-like family