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    LOC4348832 uncharacterized LOC4348832 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348832, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4348832
    Gene description
    uncharacterized LOC4348832
    Locus tag
    OSNPB_100464100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348832 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17787436..17791477, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17120667..17124771, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene 2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic-like Neighboring gene uncharacterized LOC112936634 Neighboring gene hypersensitive-induced reaction 1 protein Neighboring gene membrane protein PM19L-like Neighboring gene bifunctional riboflavin kinase/FMN phosphatase Neighboring gene E3 ubiquitin-protein ligase WAV3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4348832
    Names
    Os10g0464100
    WD domain, G-beta repeat domain-containing protein
    WD repeat-containing protein 70

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      17787436..17791477 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758995.3 → XP_015614481.1  uncharacterized protein LOC4348832

      UniProtKB/TrEMBL
      A0A0P0XV15, A2Z894, Q8H919
      Conserved Domains (2) summary
      cd00200
      Location:173 → 491
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:181 → 223
      7WD40; WD40 repeat [structural motif]

    2. XM_015758996.3 → XP_015614482.1  uncharacterized protein LOC4348832

      UniProtKB/TrEMBL
      A0A0P0XV15, A2Z894, Q8H919
      Conserved Domains (2) summary
      cd00200
      Location:173 → 491
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:181 → 223
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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