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    LOC4329858 isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329858, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329858
    Gene description
    isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial
    Locus tag
    OSNPB_020595500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1126_D09.28
    Expression
    Ubiquitous expression in flowers (RPKM 29.5), flower buds (RPKM 19.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329858 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23589517..23592834, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23107007..23110384, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329855 Neighboring gene uncharacterized LOC4329856 Neighboring gene uncharacterized LOC4329857 Neighboring gene elongation factor Tu, chloroplastic Neighboring gene eukaryotic translation initiation factor 4B1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase. Abiko T, et al. Plant Cell Physiol, 2005 Oct. PMID 16120687
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables isocitrate dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isocitrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial
    Names
    NAD-dependent isocitrate dehydrogenase c;2
    Os02g0595500
    putative NAD-dependent isocitrate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23589517..23592834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767276.3 → XP_015622762.1  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X2

      UniProtKB/TrEMBL
      Q01JY8
      Conserved Domains (1) summary
      PLN00123
      Location:28 → 374
      PLN00123; isocitrate dehydrogenase (NAD+)

    2. XM_015767275.3 → XP_015622761.1  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1

      UniProtKB/TrEMBL
      Q01JY8, Q0DZW0, Q6ZI55
      Conserved Domains (1) summary
      PLN00123
      Location:28 → 378
      PLN00123; isocitrate dehydrogenase (NAD+)
    Nucleotide Protein
    Heading Accession and Version

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