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    LOC4336560 dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336560, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336560
    Gene description
    dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
    Locus tag
    OSNPB_040544900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 8.1), roots after flowering (RPKM 7.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27780195..27787730, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27275217..27282775, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g02150 Neighboring gene GATA transcription factor 26 Neighboring gene probable WRKY transcription factor 12 Neighboring gene uncharacterized LOC112936014

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,6-mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
    Names
    Os04g0544900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27780195..27787730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309953.1 → XP_066166050.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X9

    2. XM_066309951.1 → XP_066166048.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X8

    3. XM_026025046.2 → XP_025880831.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X7

      Conserved Domains (1) summary
      cl21590
      Location:35 → 315
      PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

    4. XM_066309950.1 → XP_066166047.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X6

    5. XM_066309947.1 → XP_066166044.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X4

    6. XM_015777919.3 → XP_015633405.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A0P0WD47, B8ASM8, Q01J26, Q0JBB0, Q7XMZ9
      Conserved Domains (1) summary
      cl21590
      Location:20 → 375
      PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

    7. XM_015777918.3 → XP_015633404.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1

      Conserved Domains (1) summary
      cl21590
      Location:20 → 381
      PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

    8. XM_066309954.1 → XP_066166051.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X9

    9. XM_066309948.1 → XP_066166045.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X4

    10. XM_066309949.1 → XP_066166046.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X5

    11. XM_015777920.3 → XP_015633406.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X3

      Conserved Domains (1) summary
      cl21590
      Location:5 → 339
      PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

    12. XM_066309952.1 → XP_066166049.1  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X8

    RNA

    1. XR_010740944.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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