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    LOC4329773 cell number regulator 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329773, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329773
    Gene description
    cell number regulator 2
    Locus tag
    OSNPB_020580000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PS3
    Expression
    Biased expression in flower buds (RPKM 81.2) and flowers (RPKM 32.8) See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22801413..22802942, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22319855..22321302, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 27-like Neighboring gene uncharacterized LOC107280166 Neighboring gene cell number regulator 2 Neighboring gene uncharacterized LOC4329774 Neighboring gene F-box protein GID2 Neighboring gene 14-3-3-like protein GF14-E Neighboring gene 14-3-3-like protein GF14-E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cell number regulator 2
    Names
    B1267B06.24
    Os02g0580000
    pollen specific 3
    putative ORFX

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22801413..22802942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769336.3 → XP_015624822.1  cell number regulator 2 isoform X2

      UniProtKB/TrEMBL
      B8AER5, B9F0R0, Q6EP46
      Conserved Domains (1) summary
      pfam04749
      Location:10 → 108
      PLAC8; PLAC8 family

    2. XM_015769335.3 → XP_015624821.1  cell number regulator 2 isoform X1

      UniProtKB/TrEMBL
      B8AER5
      Conserved Domains (1) summary
      pfam04749
      Location:10 → 108
      PLAC8; PLAC8 family
    Nucleotide Protein
    Heading Accession and Version

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