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    LOC9271247 tyrosine--tRNA ligase 1, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271247, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9271247
    Gene description
    tyrosine--tRNA ligase 1, cytoplasmic
    Locus tag
    OSNPB_080320000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1136_D12.115-1
    Expression
    Ubiquitous expression in flower buds (RPKM 29.9), roots before flowering (RPKM 23.2) and 6 other tissues See more
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    Genomic context

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    See LOC9271247 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (13987274..13992780)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (13919922..13925452)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351508 Neighboring gene cyclase-like protein 3 Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene oligopeptide transporter 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tyrosine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA aminoacylation for protein translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine--tRNA ligase 1, cytoplasmic
    Names
    Os08g0320000
    P0465H09.132-1
    putative tyrosine-tRNA ligase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      13987274..13992780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794773.3 → XP_015650259.1  tyrosine--tRNA ligase 1, cytoplasmic

      UniProtKB/TrEMBL
      B8B9P8, B9F0V7, Q69UJ8, Q6Z0P0
      Conserved Domains (1) summary
      PTZ00126
      Location:32 → 380
      PTZ00126; tyrosyl-tRNA synthetase; Provisional

    RNA

    1. XR_010734433.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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