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    LOC4325296 uncharacterized LOC4325296 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325296, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325296
    Gene description
    uncharacterized LOC4325296
    Locus tag
    OSNPB_010698100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1116_H09.32-1; OJ1116_H09.32-2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 26.8), flowers (RPKM 21.2) and 6 other tissues See more
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    Genomic context

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    See LOC4325296 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29473616..29479016)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28885412..28890848)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 88B1 Neighboring gene uncharacterized LOC4325295 Neighboring gene small nucleolar RNA snoR101 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325296
    Names
    Os01g0698100
    gene suppressor-of-white-apricot protein-like
    protein SWAP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29473616..29479016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764456.3 → XP_015619942.1  uncharacterized protein LOC4325296

      UniProtKB/TrEMBL
      A0A0P0V6Y4, A0A5S6RDG1, A2WU48, Q0JK41, Q5N8K0
      Conserved Domains (3) summary
      smart00648
      Location:158 → 210
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam08648
      Location:709 → 815
      DUF1777; Protein of unknown function (DUF1777)
      pfam09750
      Location:3 → 123
      DRY_EERY; Alternative splicing regulator
    Nucleotide Protein
    Heading Accession and Version

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