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    LOC4331113 3-ketoacyl-CoA synthase 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331113, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331113
    Gene description
    3-ketoacyl-CoA synthase 12
    Locus tag
    OSNPB_020813600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1293_E04.6
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    Genomic context

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    See LOC4331113 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35352141..35354148)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34853774..34855687)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene glutathione reductase, cytosolic-like Neighboring gene uncharacterized LOC112937871 Neighboring gene transcriptional corepressor LEUNIG_HOMOLOG

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-ketoacyl-CoA synthase 12
    Names
    OSJNBa0053L11.28
    Os02g0813600
    putative fatty acid elongase 3-ketoacyl-CoA synthase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35352141..35354148
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769294.3 → XP_015624780.1  3-ketoacyl-CoA synthase 12

      UniProtKB/TrEMBL
      A0A0P0VR33, A3ACL2, Q6K3E6
      Conserved Domains (2) summary
      cl09938
      Location:32 → 305
      cond_enzymes; Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the ...
      cl21486
      Location:333 → 406
      Ketoacyl-synt_C; Beta-ketoacyl synthase, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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