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    LOC4329117 uncharacterized LOC4329117 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329117, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329117
    Gene description
    uncharacterized LOC4329117
    Locus tag
    OSNPB_020307000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 27.9), leaves before flowering (RPKM 25.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (12059160..12070009, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (12023814..12034707, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266427 Neighboring gene uncharacterized LOC4329116 Neighboring gene WD repeat-containing protein ATCSA-1 Neighboring gene uncharacterized LOC9269180

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329117
    Names
    Os02g0307000
    P0543C11.35
    guanylate-binding protein 4
    putative guanylate binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      12059160..12070009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770317.3 → XP_015625803.1  uncharacterized protein LOC4329117

      UniProtKB/TrEMBL
      B9F578, Q0E1T3, Q6K2Y3
      Conserved Domains (3) summary
      TIGR02168
      Location:678 → 948
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam02841
      Location:328 → 573
      GBP_C; Guanylate-binding protein, C-terminal domain
      cl38936
      Location:64 → 319
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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