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    LOC4341747 diphthamide biosynthesis protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341747, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341747
    Gene description
    diphthamide biosynthesis protein 3
    Locus tag
    OSNPB_060661600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 35.9), leaves after flowering (RPKM 21.3) and 6 other tissues See more
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    Genomic context

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    See LOC4341747 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27262790..27264957)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene putative clathrin assembly protein At5g57200 Neighboring gene uncharacterized LOC4341746 Neighboring gene TBC1 domain family member 5 homolog B Neighboring gene uncharacterized LOC9271699

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein histidyl modification to diphthamide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA wobble uridine modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    diphthamide biosynthesis protein 3
    Names
    OSJNBa0051O02.36
    OSJNBb0065C04.3
    Os06g0661600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27262790..27264957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788346.2 → XP_015643832.1  diphthamide biosynthesis protein 3

      UniProtKB/TrEMBL
      A2YFV6, Q0DAD3, Q651U5
      Conserved Domains (1) summary
      cl21704
      Location:1 → 65
      zf-CSL; CSL zinc finger

    2. XM_015788345.2 → XP_015643831.1  diphthamide biosynthesis protein 3

      UniProtKB/TrEMBL
      A2YFV6, Q0DAD3, Q651U5
      Conserved Domains (1) summary
      cl21704
      Location:1 → 65
      zf-CSL; CSL zinc finger
    Nucleotide Protein
    Heading Accession and Version

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