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    LOC4328824 actin-related protein 2/3 complex subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328824, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328824
    Gene description
    actin-related protein 2/3 complex subunit 3
    Locus tag
    OSNPB_020235000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1145_E05.12
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 34.9), roots after flowering (RPKM 34.8) and 6 other tissues See more
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    Genomic context

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    See LOC4328824 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7668811..7671235)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7643688..7646134)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328822 Neighboring gene U2 small nuclear ribonucleoprotein A' Neighboring gene uncharacterized LOC9266753 Neighboring gene large ribosomal subunit protein uL5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Arp2/3 protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-related protein 2/3 complex subunit 3
    Names
    Os02g0235000
    putative actin related protein 2/3 complex, 21 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      7668811..7671235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023340.2 → XP_025879125.1  actin-related protein 2/3 complex subunit 3 isoform X2

      UniProtKB/TrEMBL
      A0A5S6R842, B7F9M0, Q0E2J0
      Conserved Domains (1) summary
      pfam04062
      Location:2 → 127
      P21-Arc; ARP2/3 complex ARPC3 (21 kDa) subunit

    2. XM_015770875.3 → XP_015626361.1  actin-related protein 2/3 complex subunit 3 isoform X1

      UniProtKB/TrEMBL
      B8AEK9, B9F4G7, Q6EUK0
      Conserved Domains (1) summary
      pfam04062
      Location:2 → 170
      P21-Arc; ARP2/3 complex ARPC3 (21 kDa) subunit
    Nucleotide Protein
    Heading Accession and Version

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