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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032796.1 RefSeqGene
- Range
-
5022..41086
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1151
mRNA and Protein(s)
-
NM_001267722.2 → NP_001254651.1 signal recognition particle subunit SRP72 isoform 2
See identical proteins and their annotated locations for NP_001254651.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks 2 consecutive in-frame coding exons in the 5' region compared to variant 1, which results in a shorter isoform (2) missing an internal protein segment compared to isoform 1.
- Source sequence(s)
-
AF069765, AK023480, BM985263, BM985419, BX537991, DB487204
- Consensus CDS
-
CCDS58898.1
- UniProtKB/TrEMBL
-
Q71V07
- Related
- ENSP00000424576.1, ENST00000510663.6
- Conserved Domains (4) summary
-
- sd00006
Location:44 → 74
- TPR; TPR repeat [structural motif]
- pfam08492
Location:470 → 523
- SRP72; SRP72 RNA-binding domain
- pfam17004
Location:36 → 157
- SRP_TPR_like; Putative TPR-like repeat
- cl26002
Location:23 → 419
- TPR_11; TPR repeat
-
NM_006947.4 → NP_008878.3 signal recognition particle subunit SRP72 isoform 1
See identical proteins and their annotated locations for NP_008878.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the predominant transcript, and encodes the longer isoform (1).
- Source sequence(s)
-
AC114766, AF069765, BM985419, BX537991, CN270014, DB487204
- Consensus CDS
-
CCDS3506.1
- UniProtKB/Swiss-Prot
- G5E9Z8, O76094, Q7Z3C0
- UniProtKB/TrEMBL
- A0A024RD94, Q71V07, V9HWK0
- Related
- ENSP00000495128.1, ENST00000642900.1
- Conserved Domains (5) summary
-
- TIGR02917
Location:233 → 503
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:176 → 204
- TPR; TPR repeat [structural motif]
- pfam13424
Location:185 → 255
- TPR_12; Tetratricopeptide repeat
- pfam17004
Location:36 → 157
- SRP_TPR_like; Putative TPR-like repeat
- pfam08492
Location:532 → 584
- SRP72; SRP72 RNA-binding domain
RNA
-
NR_151856.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC114766
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
56467617..56503681
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024454192.2 → XP_024309960.1 signal recognition particle subunit SRP72 isoform X1
- UniProtKB/TrEMBL
-
Q86X80
- Conserved Domains (5) summary
-
- sd00006
Location:176 → 204
- TPR; TPR repeat [structural motif]
- sd00004
Location:341 → 367
- PPR; PPR repeat [structural motif]
- pfam13424
Location:185 → 255
- TPR_12; Tetratricopeptide repeat
- pfam17004
Location:36 → 157
- SRP_TPR_like; Putative TPR-like repeat
- cl26002
Location:233 → 503
- TPR_11; TPR repeat
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
59955623..59991687
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054350750.1 → XP_054206725.1 signal recognition particle subunit SRP72 isoform X1
- UniProtKB/TrEMBL
-
Q86X80