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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001130082.3 → NP_001123554.1  plexin-B1 precursor
See identical proteins and their annotated locations for NP_001123554.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
- Source sequence(s)
-
AB007867, AC134772, BC066773
- Consensus CDS
-
CCDS2765.1
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
- Related
- ENSP00000296440.6, ENST00000296440.11
- Conserved Domains (10) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- PHA03247
Location:681 → 839
- PHA03247; large tegument protein UL36; Provisional
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2102
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- pfam17960
Location:541 → 627
- TIG_plexin; TIG domain
- pfam18020
Location:921 → 1020
- TIG_2; TIG domain found in plexin
-
NM_002673.6 → NP_002664.2  plexin-B1 precursor
See identical proteins and their annotated locations for NP_002664.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
- Source sequence(s)
-
AB007867, AC134772, BC066773
- Consensus CDS
-
CCDS2765.1
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
- Related
- ENSP00000351338.4, ENST00000358536.8
- Conserved Domains (10) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- PHA03247
Location:681 → 839
- PHA03247; large tegument protein UL36; Provisional
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2102
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- pfam17960
Location:541 → 627
- TIG_plexin; TIG domain
- pfam18020
Location:921 → 1020
- TIG_2; TIG domain found in plexin
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12Â Reference GRCh38.p14 Primary Assembly
- Range
-
48403854..48430310 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047448333.1 → XP_047304289.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_011533835.2 → XP_011532137.1  plexin-B1 isoform X1
See identical proteins and their annotated locations for XP_011532137.1
- Conserved Domains (8) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2103
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- cl26464
Location:681 → 839
- Atrophin-1; Atrophin-1 family
-
XM_047448335.1 → XP_047304291.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_011533836.2 → XP_011532138.1  plexin-B1 isoform X1
See identical proteins and their annotated locations for XP_011532138.1
- Conserved Domains (8) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2103
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- cl26464
Location:681 → 839
- Atrophin-1; Atrophin-1 family
-
XM_011533833.3 → XP_011532135.1  plexin-B1 isoform X1
See identical proteins and their annotated locations for XP_011532135.1
- Conserved Domains (8) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2103
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- cl26464
Location:681 → 839
- Atrophin-1; Atrophin-1 family
-
XM_047448331.1 → XP_047304287.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_017006630.2 → XP_016862119.1  plexin-B1 isoform X1
- Conserved Domains (8) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2103
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- cl26464
Location:681 → 839
- Atrophin-1; Atrophin-1 family
-
XM_047448332.1 → XP_047304288.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_011533837.2 → XP_011532139.1  plexin-B1 isoform X1
See identical proteins and their annotated locations for XP_011532139.1
- Conserved Domains (8) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2103
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- cl26464
Location:681 → 839
- Atrophin-1; Atrophin-1 family
-
XM_011533834.2 → XP_011532136.1  plexin-B1 isoform X1
See identical proteins and their annotated locations for XP_011532136.1
- Conserved Domains (8) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2103
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- cl26464
Location:681 → 839
- Atrophin-1; Atrophin-1 family
-
XM_047448334.1 → XP_047304290.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_047448330.1 → XP_047304286.1  plexin-B1 isoform X1
-
XM_017006631.2 → XP_016862120.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
- Conserved Domains (10) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- PHA03247
Location:681 → 839
- PHA03247; large tegument protein UL36; Provisional
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2102
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- pfam17960
Location:541 → 627
- TIG_plexin; TIG domain
- pfam18020
Location:921 → 1020
- TIG_2; TIG domain found in plexin
-
XM_024453600.2 → XP_024309368.1  plexin-B1 isoform X1
- Conserved Domains (8) summary
-
- cd11275
Location:28 → 480
- Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
- smart00423
Location:641 → 677
- PSI; domain found in Plexins, Semaphorins and Integrins
- cd01179
Location:1162 → 1249
- IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01180
Location:1070 → 1161
- IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- cd01181
Location:1252 → 1376
- IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
- pfam01437
Location:481 → 527
- PSI; Plexin repeat
- pfam08337
Location:1562 → 2103
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
- cl26464
Location:681 → 839
- Atrophin-1; Atrophin-1 family
-
XM_047448336.1 → XP_047304292.1  plexin-B1 isoform X3
RNA
-
XR_007095694.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1Â Alternate T2T-CHM13v2.0
- Range
-
48431864..48458348 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054346894.1 → XP_054202869.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_054346890.1 → XP_054202865.1  plexin-B1 isoform X1
-
XM_054346896.1 → XP_054202871.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_054346891.1 → XP_054202866.1  plexin-B1 isoform X1
-
XM_054346897.1 → XP_054202872.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_054346885.1 → XP_054202860.1  plexin-B1 isoform X1
-
XM_054346893.1 → XP_054202868.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_054346887.1 → XP_054202862.1  plexin-B1 isoform X1
-
XM_054346892.1 → XP_054202867.1  plexin-B1 isoform X1
-
XM_054346886.1 → XP_054202861.1  plexin-B1 isoform X1
-
XM_054346889.1 → XP_054202864.1  plexin-B1 isoform X1
-
XM_054346888.1 → XP_054202863.1  plexin-B1 isoform X1
-
XM_054346895.1 → XP_054202870.1  plexin-B1 isoform X2
- UniProtKB/Swiss-Prot
- A6H8Y2, O43157, Q6NY20, Q9UIV7, Q9UJ92, Q9UJ93
-
XM_054346898.1 → XP_054202873.1  plexin-B1 isoform X3
RNA
-
XR_008486736.1 RNA Sequence