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    LOC4342548 ETO1-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342548, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342548
    Gene description
    ETO1-like protein 1
    Locus tag
    OSNPB_070178100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1361_E02.109
    Expression
    Ubiquitous expression in flowers (RPKM 20.5), flower buds (RPKM 19.5) and 6 other tissues See more
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    Genomic context

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    See LOC4342548 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4178839..4183803)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4118359..4123487)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269020 Neighboring gene uncharacterized LOC112939549 Neighboring gene uncharacterized LOC136357356 Neighboring gene heat stress transcription factor A-2b-like Neighboring gene low molecular mass early light-inducible protein HV60, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ETO1-like protein 1
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats BTBT2
    Os07g0178100
    tetratricopeptide repeat (TPR)-containing protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4178839..4183803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791775.3 → XP_015647261.1  ETO1-like protein 1

      UniProtKB/TrEMBL
      A2YIQ5, A3BH51, Q0D882, Q69W85
      Conserved Domains (3) summary
      TIGR02917
      Location:383 → 833
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:710 → 737
      TPR; TPR repeat [structural motif]
      cl38908
      Location:181 → 262
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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