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    LOC4340067 receptor-like protein EIX2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340067, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340067
    Gene description
    receptor-like protein EIX2
    Locus tag
    OSNPB_060140200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 8.0), flowers (RPKM 7.7) and 6 other tissues See more
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    Genomic context

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    See LOC4340067 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2264072..2269128, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2106663..2111881, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene proteasome subunit beta type-6 Neighboring gene leucine carboxyl methyltransferase 1 homolog Neighboring gene receptor-like protein EIX1 Neighboring gene homeobox-leucine zipper protein HOX28-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like protein EIX2
    Names
    OSJNBa0041F13.38
    Os06g0140200
    putative HcrVf3 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2264072..2269128 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788892.3 → XP_015644378.1  receptor-like protein EIX2

      UniProtKB/TrEMBL
      A0A0P0WSA9, A2Y929, B9FRE6, Q5VPE8
      Conserved Domains (3) summary
      PLN03150
      Location:55 → 163
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:290 → 923
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:571 → 593
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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