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    LOC4338551 chaperone protein dnaJ 49 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338551, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4338551
    Gene description
    chaperone protein dnaJ 49
    Locus tag
    OSNPB_050364500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 5.9), leaves after flowering (RPKM 5.9) and 6 other tissues See more
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    Genomic context

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    See LOC4338551 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17541556..17545919, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17441560..17445943, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356662 Neighboring gene uncharacterized LOC9271982 Neighboring gene serine/arginine-rich-splicing factor SR34 Neighboring gene SNF1-related protein kinase regulatory subunit gamma-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp70 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to misfolded protein IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperone protein dnaJ 49
    Names
    Os05g0364500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17541556..17545919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785138.3 → XP_015640624.1  chaperone protein dnaJ 49

      UniProtKB/TrEMBL
      A2Y3T0, Q0DIT7, Q688H7
      Conserved Domains (3) summary
      COG0484
      Location:103 → 234
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:106 → 167
      DnaJ; DnaJ domain
      pfam09320
      Location:280 → 363
      DUF1977; Domain of unknown function (DUF1977)

    2. XM_015785141.3 → XP_015640627.1  chaperone protein dnaJ 49

      UniProtKB/TrEMBL
      A2Y3T0, Q0DIT7, Q688H7
      Conserved Domains (3) summary
      COG0484
      Location:103 → 234
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:106 → 167
      DnaJ; DnaJ domain
      pfam09320
      Location:280 → 363
      DUF1977; Domain of unknown function (DUF1977)
    Nucleotide Protein
    Heading Accession and Version

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