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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001322178.2 → NP_001309107.1 contactin-associated protein-like 4 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Conserved Domains (9) summary
-
- smart00231
Location:55 → 177
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:912 → 946
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:54 → 176
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:744 → 888
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:503 → 534
- EGF; EGF-like domain
- pfam02210
Location:212 → 341
- Laminin_G_2; Laminin G domain
- cl00085
Location:542 → 589
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:554 → 637
- COLFI; Fibrillar collagen C-terminal domain
- cl22861
Location:371 → 429
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
NM_001322179.2 → NP_001309108.1 contactin-associated protein-like 4 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Conserved Domains (7) summary
-
- smart00231
Location:55 → 177
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00057
Location:54 → 176
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:371 → 521
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:553 → 584
- EGF; EGF-like domain
- pfam02210
Location:212 → 341
- Laminin_G_2; Laminin G domain
- cl00085
Location:592 → 639
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:604 → 687
- COLFI; Fibrillar collagen C-terminal domain
-
NM_001322180.2 → NP_001309109.1 contactin-associated protein-like 4 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Conserved Domains (8) summary
-
- smart00231
Location:3 → 48
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:833 → 867
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:3 → 47
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:665 → 809
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:424 → 455
- EGF; EGF-like domain
- pfam02210
Location:83 → 212
- Laminin_G_2; Laminin G domain
- cl00085
Location:463 → 510
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:475 → 558
- COLFI; Fibrillar collagen C-terminal domain
-
NM_001322181.2 → NP_001309110.1 contactin-associated protein-like 4 isoform 6 precursor
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Conserved Domains (8) summary
-
- smart00231
Location:55 → 176
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:961 → 995
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:54 → 175
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:793 → 937
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:552 → 583
- EGF; EGF-like domain
- pfam02210
Location:211 → 340
- Laminin_G_2; Laminin G domain
- cl00085
Location:591 → 638
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:603 → 686
- COLFI; Fibrillar collagen C-terminal domain
-
NM_001322187.2 → NP_001309116.1 contactin-associated protein-like 4 isoform 7
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- Conserved Domains (7) summary
-
- cd00054
Location:490 → 524
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00110
Location:322 → 466
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:81 → 112
- EGF; EGF-like domain
- pfam02210
Location:574 → 704
- Laminin_G_2; Laminin G domain
- cl00085
Location:120 → 167
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:132 → 215
- COLFI; Fibrillar collagen C-terminal domain
- cl22861
Location:2 → 52
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
NM_001322188.2 → NP_001309117.1 contactin-associated protein-like 4 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Conserved Domains (8) summary
-
- smart00231
Location:55 → 177
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:962 → 996
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:54 → 176
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:794 → 938
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:553 → 584
- EGF; EGF-like domain
- pfam02210
Location:212 → 341
- Laminin_G_2; Laminin G domain
- cl00085
Location:592 → 639
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:604 → 687
- COLFI; Fibrillar collagen C-terminal domain
-
NM_001322189.2 → NP_001309118.1 contactin-associated protein-like 4 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Conserved Domains (8) summary
-
- smart00231
Location:3 → 89
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:874 → 908
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:1 → 88
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:706 → 850
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:465 → 496
- EGF; EGF-like domain
- pfam02210
Location:124 → 253
- Laminin_G_2; Laminin G domain
- cl00085
Location:504 → 551
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:516 → 599
- COLFI; Fibrillar collagen C-terminal domain
-
NM_001322190.2 → NP_001309119.1 contactin-associated protein-like 4 isoform 10
Status: REVIEWED
- Source sequence(s)
-
AB100092, AC106741, AC108125, FO681478
- Consensus CDS
-
CCDS82015.1
- UniProtKB/TrEMBL
- A0A087WTA1, F5H107
- Related
- ENSP00000477698.1, ENST00000622250.4
- Conserved Domains (8) summary
-
- smart00231
Location:55 → 177
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:914 → 948
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:54 → 176
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:746 → 890
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:505 → 536
- EGF; EGF-like domain
- pfam02210
Location:998 → 1128
- Laminin_G_2; Laminin G domain
- cl00085
Location:544 → 591
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:556 → 639
- COLFI; Fibrillar collagen C-terminal domain
-
NM_001322191.2 → NP_001309120.1 contactin-associated protein-like 4 isoform 11
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
- Conserved Domains (7) summary
-
- cd00054
Location:653 → 687
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00110
Location:485 → 629
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:244 → 275
- EGF; EGF-like domain
- pfam02210
Location:737 → 867
- Laminin_G_2; Laminin G domain
- cl00085
Location:283 → 330
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:295 → 378
- COLFI; Fibrillar collagen C-terminal domain
- cl22861
Location:1 → 32
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
NM_033401.5 → NP_207837.2 contactin-associated protein-like 4 isoform 1 precursor
See identical proteins and their annotated locations for NP_207837.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AB051550, AC106741, AC108125, BM544789, Z44514
- Consensus CDS
-
CCDS73915.1
- UniProtKB/Swiss-Prot
- E9PFZ6, Q86YZ7, Q9C0A0
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Related
- ENSP00000479811.1, ENST00000611870.5
- Conserved Domains (7) summary
-
- cd00054
Location:962 → 996
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:54 → 176
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:794 → 938
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:553 → 584
- EGF; EGF-like domain
- pfam02210
Location:212 → 341
- Laminin_G_2; Laminin G domain
- cl00085
Location:592 → 639
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:604 → 687
- COLFI; Fibrillar collagen C-terminal domain
-
NM_138994.5 → NP_620481.2 contactin-associated protein-like 4 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate exon in the 5' UTR and CDS and lacks several coding exons, compared to variant 1. It encodes a shorter protein (isoform 2) which has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AB100093, AC106741, AC108125, DA319383, DB050637, DT217898
- Consensus CDS
-
CCDS10924.2
- UniProtKB/TrEMBL
-
F5H107
- Related
- ENSP00000418741.1, ENST00000478060.5
- Conserved Domains (8) summary
-
- smart00231
Location:30 → 152
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:889 → 923
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:29 → 151
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:721 → 865
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:480 → 511
- EGF; EGF-like domain
- pfam02210
Location:973 → 1103
- Laminin_G_2; Laminin G domain
- cl00085
Location:519 → 566
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:531 → 614
- COLFI; Fibrillar collagen C-terminal domain
RNA
-
NR_136210.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
-
NR_136213.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
-
NR_136216.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC010528, AC106741, AC108125, FO681478
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
76277401..76560757
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047434819.1 → XP_047290775.1 contactin-associated protein-like 4 isoform X2
- UniProtKB/TrEMBL
-
Q96M80
-
XM_011523403.3 → XP_011521705.1 contactin-associated protein-like 4 isoform X1
- UniProtKB/TrEMBL
-
A0A0A0MR20
- Related
- ENSP00000417628.1, ENST00000476707.1
- Conserved Domains (8) summary
-
- smart00231
Location:30 → 152
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- cd00054
Location:937 → 971
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00057
Location:29 → 151
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:769 → 913
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:528 → 559
- EGF; EGF-like domain
- pfam02210
Location:187 → 316
- Laminin_G_2; Laminin G domain
- cl00085
Location:567 → 614
- FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
- cl02436
Location:579 → 662
- COLFI; Fibrillar collagen C-terminal domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
82333540..82616946
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054314225.1 → XP_054170200.1 contactin-associated protein-like 4 isoform X2
- UniProtKB/TrEMBL
-
Q96M80
-
XM_054314224.1 → XP_054170199.1 contactin-associated protein-like 4 isoform X3
- UniProtKB/TrEMBL
-
A0A0A0MR20