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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001197295.2 → NP_001184224.1 extracellular matrix protein 2 isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AB011792, BM972177, BX537976, DC300418
- UniProtKB/TrEMBL
-
B4DK93
- Conserved Domains (4) summary
-
- COG4886
Location:469 → 651
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:299 → 322
- LRR_RI; leucine-rich repeat [structural motif]
- pfam00093
Location:103 → 157
- VWC; von Willebrand factor type C domain
- cl26018
Location:298 → 550
- NEL; C-terminal novel E3 ligase, LRR-interacting
-
NM_001197296.2 → NP_001184225.1 extracellular matrix protein 2 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice junction at the 5' end of an exon and differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (3) lacks an internal segment and has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AB011792, BX537976, DC300418
- Consensus CDS
-
CCDS56578.1
- UniProtKB/TrEMBL
-
B4DK93
- Related
- ENSP00000393971.2, ENST00000444490.6
- Conserved Domains (5) summary
-
- cd00116
Location:296 → 525
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:588 → 610
- LRR_1; leucine-rich repeat [structural motif]
- sd00033
Location:299 → 322
- LRR_RI; leucine-rich repeat [structural motif]
- pfam00093
Location:103 → 157
- VWC; von Willebrand factor type C domain
- pfam13855
Location:321 → 383
- LRR_8; Leucine rich repeat
-
NM_001393.4 → NP_001384.1 extracellular matrix protein 2 isoform 1 precursor
See identical proteins and their annotated locations for NP_001384.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AB011792, BM972177, DC300418
- Consensus CDS
-
CCDS6698.1
- UniProtKB/Swiss-Prot
- B2R730, E2PU11, O94769, Q5T9F2, Q7Z3D0
- UniProtKB/TrEMBL
-
B4DK93
- Related
- ENSP00000344758.5, ENST00000344604.10
- Conserved Domains (5) summary
-
- PRK15370
Location:320 → 572
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- COG4886
Location:491 → 673
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:321 → 344
- LRR_RI; leucine-rich repeat [structural motif]
- pfam00093
Location:103 → 157
- VWC; von Willebrand factor type C domain
- pfam14828
Location:116 → 210
- Amnionless
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
92493547..92559106 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047422899.1 → XP_047278855.1 extracellular matrix protein 2 isoform X1
- UniProtKB/Swiss-Prot
- B2R730, E2PU11, O94769, Q5T9F2, Q7Z3D0
- UniProtKB/TrEMBL
-
B4DK93
-
XM_024447436.2 → XP_024303204.1 extracellular matrix protein 2 isoform X1
- UniProtKB/Swiss-Prot
- B2R730, E2PU11, O94769, Q5T9F2, Q7Z3D0
- UniProtKB/TrEMBL
-
B4DK93
- Conserved Domains (5) summary
-
- PRK15370
Location:320 → 572
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- COG4886
Location:491 → 673
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:321 → 344
- LRR_RI; leucine-rich repeat [structural motif]
- pfam00093
Location:103 → 157
- VWC; von Willebrand factor type C domain
- pfam14828
Location:116 → 210
- Amnionless
-
XM_024447435.2 → XP_024303203.1 extracellular matrix protein 2 isoform X1
- UniProtKB/Swiss-Prot
- B2R730, E2PU11, O94769, Q5T9F2, Q7Z3D0
- UniProtKB/TrEMBL
-
B4DK93
- Conserved Domains (5) summary
-
- PRK15370
Location:320 → 572
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- COG4886
Location:491 → 673
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:321 → 344
- LRR_RI; leucine-rich repeat [structural motif]
- pfam00093
Location:103 → 157
- VWC; von Willebrand factor type C domain
- pfam14828
Location:116 → 210
- Amnionless
-
XM_017014376.3 → XP_016869865.1 extracellular matrix protein 2 isoform X2
RNA
-
XR_007061259.1 RNA Sequence
Reference GRCh38.p14 PATCHES
Genomic
-
NW_025791788.1 Reference GRCh38.p14 PATCHES
- Range
-
328274..371451 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054333086.1 → XP_054189061.1 extracellular matrix protein 2 isoform X1
- UniProtKB/Swiss-Prot
- B2R730, E2PU11, O94769, Q5T9F2, Q7Z3D0
- UniProtKB/TrEMBL
-
B4DK93
-
XM_054333085.1 → XP_054189060.1 extracellular matrix protein 2 isoform X1
- UniProtKB/Swiss-Prot
- B2R730, E2PU11, O94769, Q5T9F2, Q7Z3D0
- UniProtKB/TrEMBL
-
B4DK93
-
XM_054333087.1 → XP_054189062.1 extracellular matrix protein 2 isoform X2
RNA
-
XR_008485819.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
104660046..104703254 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054362232.1 → XP_054218207.1 extracellular matrix protein 2 isoform X1
- UniProtKB/TrEMBL
-
B4DK93
-
XM_054362231.1 → XP_054218206.1 extracellular matrix protein 2 isoform X1
- UniProtKB/TrEMBL
-
B4DK93
-
XM_054362233.1 → XP_054218208.1 extracellular matrix protein 2 isoform X2
RNA
-
XR_008487958.1 RNA Sequence