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    LOC4342554 pentatricopeptide repeat-containing protein At4g20740 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342554, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342554
    Gene description
    pentatricopeptide repeat-containing protein At4g20740
    Locus tag
    OSNPB_070179000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1014_E09.3; OJ1361_E02.121
    Expression
    Ubiquitous expression in flower buds (RPKM 2.3), flowers (RPKM 2.1) and 6 other tissues See more
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    Genomic context

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    See LOC4342554 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4216597..4222730)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4156184..4162478)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene low molecular mass early light-inducible protein HV60, chloroplastic Neighboring gene ruvB-like protein 1 Neighboring gene uncharacterized LOC112939621 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP63

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g20740
    Names
    Os07g0179000
    putative fertility restorer

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4216597..4222730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312444.1 → XP_066168541.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    2. XM_015792042.3 → XP_015647528.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6
      Conserved Domains (3) summary
      PLN03218
      Location:239 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:302 → 329
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:508 → 555
      PPR_2; PPR repeat family

    3. XM_066312448.1 → XP_066168545.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    4. XM_066312445.1 → XP_066168542.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    5. XM_066312452.1 → XP_066168549.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    6. XM_066312453.1 → XP_066168550.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    7. XM_015792036.3 → XP_015647522.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6
      Conserved Domains (3) summary
      PLN03218
      Location:239 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:302 → 329
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:508 → 555
      PPR_2; PPR repeat family

    8. XM_066312447.1 → XP_066168544.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    9. XM_066312446.1 → XP_066168543.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    10. XM_015792037.3 → XP_015647523.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6
      Conserved Domains (3) summary
      PLN03218
      Location:239 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:302 → 329
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:508 → 555
      PPR_2; PPR repeat family

    11. XM_066312449.1 → XP_066168546.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    12. XM_015792038.3 → XP_015647524.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6
      Conserved Domains (3) summary
      PLN03218
      Location:239 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:302 → 329
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:508 → 555
      PPR_2; PPR repeat family

    13. XM_066312451.1 → XP_066168548.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    14. XM_015792044.3 → XP_015647530.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6
      Conserved Domains (3) summary
      PLN03218
      Location:239 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:302 → 329
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:508 → 555
      PPR_2; PPR repeat family

    15. XM_066312454.1 → XP_066168551.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    16. XM_066312450.1 → XP_066168547.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6

    17. XM_015792046.3 → XP_015647532.1  pentatricopeptide repeat-containing protein At4g20740

      UniProtKB/TrEMBL
      A2YIR0, A3BH56, Q6ZLD6
      Conserved Domains (3) summary
      PLN03218
      Location:239 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:302 → 329
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:508 → 555
      PPR_2; PPR repeat family
    Nucleotide Protein
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