arvcfb ARVCF delta catenin family member b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: arvcfbprovided by ZNC
Official Full Name: ARVCF delta catenin family member bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-060526-60
See related: Ensembl:ENSDARG00000061688 AllianceGenome:ZFIN:ZDB-GENE-060526-60
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fc11a08; si:ch211-173n20.1
Summary: Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within cell adhesion. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 26

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (26263128..26685415, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (25662975..26085264, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in animal organ development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell-cell adhesion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ARVCF delta catenin family member b

Names: armadillo repeat gene deleted in velocardiofacial syndrome b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128534.1 → NP_001122006.1 ARVCF delta catenin family member b

See identical proteins and their annotated locations for NP_001122006.1

Status: PROVISIONAL

Source sequence(s)

BX511248, BX890595

UniProtKB/TrEMBL

A0A8M1NHH9, A2BGY1, F1QY26

Related

ENSDARP00000082655.6, ENSDART00000088222.6

Conserved Domains (3) summary

smart00185
Location:422 → 462

ARM; Armadillo/beta-catenin-like repeats

sd00043
Location:393 → 418

ARM; armadillo repeat [structural motif]

cl27106
Location:393 → 506

PLN03200; cellulose synthase-interactive protein; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007116.7 Reference GRCz11 Primary Assembly

Range

26263128..26685415 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_068221255.1 → XP_068077356.1 ARVCF delta catenin family member b isoform X18
XM_068221252.1 → XP_068077353.1 ARVCF delta catenin family member b isoform X14
XM_068221248.1 → XP_068077349.1 ARVCF delta catenin family member b isoform X2
XM_068221260.1 → XP_068077361.1 ARVCF delta catenin family member b isoform X25
XM_068221259.1 → XP_068077360.1 ARVCF delta catenin family member b isoform X24
XM_068221258.1 → XP_068077359.1 ARVCF delta catenin family member b isoform X23
XM_021476273.2 → XP_021331948.1 ARVCF delta catenin family member b isoform X21

UniProtKB/TrEMBL

A0A8M9PXY3

Conserved Domains (3) summary

smart00185
Location:386 → 426

ARM; Armadillo/beta-catenin-like repeats

sd00043
Location:357 → 382

ARM; armadillo repeat [structural motif]

cl27106
Location:357 → 470

PLN03200; cellulose synthase-interactive protein; Provisional
XM_068221257.1 → XP_068077358.1 ARVCF delta catenin family member b isoform X21
XM_068221254.1 → XP_068077355.1 ARVCF delta catenin family member b isoform X17

Related

ENSDARP00000117208.2, ENSDART00000146070.4
XM_068221256.1 → XP_068077357.1 ARVCF delta catenin family member b isoform X20
XM_068221253.1 → XP_068077354.1 ARVCF delta catenin family member b isoform X16
XM_068221251.1 → XP_068077352.1 ARVCF delta catenin family member b isoform X13
XM_021476267.2 → XP_021331942.1 ARVCF delta catenin family member b isoform X3

UniProtKB/TrEMBL

A0A8M9PKF3

Conserved Domains (3) summary

smart00185
Location:461 → 501

ARM; Armadillo/beta-catenin-like repeats

pfam00514
Location:504 → 545

Arm; Armadillo/beta-catenin-like repeat

sd00043
Location:432 → 457

ARM; armadillo repeat [structural motif]
XM_009301526.4 → XP_009299801.1 ARVCF delta catenin family member b isoform X11

UniProtKB/TrEMBL

A0A8M3ASI4

Conserved Domains (3) summary

cd00020
Location:395 → 513

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:718 → 786

HEAT_2; HEAT repeats

sd00043
Location:400 → 425

ARM; armadillo repeat [structural motif]
XM_009301527.4 → XP_009299802.1 ARVCF delta catenin family member b isoform X12

UniProtKB/TrEMBL

A0A8M3B2J8

Conserved Domains (3) summary

cd00020
Location:434 → 552

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:717 → 785

HEAT_2; HEAT repeats

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_068221250.1 → XP_068077351.1 ARVCF delta catenin family member b isoform X9
XM_009301522.4 → XP_009299797.1 ARVCF delta catenin family member b isoform X5

UniProtKB/TrEMBL

A0A8M3AZP1

Conserved Domains (3) summary

cd00020
Location:434 → 552

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:741 → 809

HEAT_2; HEAT repeats

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_021476268.2 → XP_021331943.1 ARVCF delta catenin family member b isoform X10

UniProtKB/TrEMBL

A0A8M9PXX9

Conserved Domains (3) summary

smart00185
Location:468 → 508

ARM; Armadillo/beta-catenin-like repeats

pfam00514
Location:511 → 552

Arm; Armadillo/beta-catenin-like repeat

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_068221249.1 → XP_068077350.1 ARVCF delta catenin family member b isoform X7
XM_009301521.4 → XP_009299796.1 ARVCF delta catenin family member b isoform X4

UniProtKB/TrEMBL

A0A8M3B2J5

Conserved Domains (3) summary

cd00020
Location:434 → 552

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:747 → 815

HEAT_2; HEAT repeats

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_021476270.2 → XP_021331945.1 ARVCF delta catenin family member b isoform X15

UniProtKB/TrEMBL

A0A8M9QE79

Conserved Domains (3) summary

smart00185
Location:468 → 508

ARM; Armadillo/beta-catenin-like repeats

pfam00514
Location:511 → 552

Arm; Armadillo/beta-catenin-like repeat

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_009301523.4 → XP_009299798.1 ARVCF delta catenin family member b isoform X6

UniProtKB/TrEMBL

A0A8M3ASE0

Conserved Domains (3) summary

cd00020
Location:434 → 552

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:757 → 825

HEAT_2; HEAT repeats

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_009301525.3 → XP_009299800.1 ARVCF delta catenin family member b isoform X8

UniProtKB/TrEMBL

A0A8M3B9P1

Conserved Domains (3) summary

cd00020
Location:434 → 552

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:757 → 825

HEAT_2; HEAT repeats

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_009301520.4 → XP_009299795.1 ARVCF delta catenin family member b isoform X1

UniProtKB/TrEMBL

A0A8M3ASI2

Conserved Domains (3) summary

cd00020
Location:434 → 552

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:757 → 825

HEAT_2; HEAT repeats

sd00043
Location:439 → 464

ARM; armadillo repeat [structural motif]
XM_009301533.4 → XP_009299808.1 ARVCF delta catenin family member b isoform X22

UniProtKB/TrEMBL

A0A8M3ASE4

Conserved Domains (3) summary

cd00020
Location:324 → 442

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:647 → 715

HEAT_2; HEAT repeats

sd00043
Location:329 → 354

ARM; armadillo repeat [structural motif]
XM_009301531.4 → XP_009299806.1 ARVCF delta catenin family member b isoform X19

UniProtKB/TrEMBL

A0A8M3AZP7

Conserved Domains (3) summary

cd00020
Location:370 → 488

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

pfam13646
Location:693 → 761

HEAT_2; HEAT repeats

sd00043
Location:375 → 400

ARM; armadillo repeat [structural motif]