NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001001560.3 → NP_001001560.1 ADP-ribosylation factor-binding protein GGA1 isoform 2
See identical proteins and their annotated locations for NP_001001560.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks 2 in-frame exons in the coding region, as compared to variant 1. The encoded isoform 2 thus lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AK075256, AL110219, BC044629
- Consensus CDS
-
CCDS33643.1
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Related
- ENSP00000321288.8, ENST00000325180.12
- Conserved Domains (3) summary
-
- smart00809
Location:430 → 544
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd03567
Location:9 → 147
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- cl03906
Location:210 → 277
- GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins
-
NM_001172687.2 → NP_001166158.1 ADP-ribosylation factor-binding protein GGA1 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an in-frame segment in the coding region, as compared to variant 1. The resulting isoform (4) lacks an internal segment of 4 aa, as compared to isoform 1.
- Source sequence(s)
-
AK075256, AL110219
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Conserved Domains (4) summary
-
- smart00809
Location:513 → 627
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd03567
Location:9 → 147
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- cd14239
Location:210 → 299
- GAT_GGA1_GGA2; GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- cl00753
Location:180 → 234
- DUF327; Protein of unknown function (DUF327)
-
NM_001172688.2 → NP_001166159.1 ADP-ribosylation factor-binding protein GGA1 isoform 5
See identical proteins and their annotated locations for NP_001166159.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) has an alternate 5' sequence, which results in a downstream AUG start codon, as compared to variant 1. The resulting isoform (5) has a shorter N-terminus, as compared to isoform 1.
- Source sequence(s)
-
AK122898, AL110219
- Consensus CDS
-
CCDS54526.1
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Related
- ENSP00000385287.1, ENST00000406772.5
- Conserved Domains (4) summary
-
- smart00809
Location:444 → 558
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:137 → 225
- GAT_GGA1_GGA2; canonical GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- pfam18308
Location:96 → 134
- GGA_N-GAT; GGA N-GAT domain
- cl02544
Location:1 → 74
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
-
NM_001363771.2 → NP_001350700.1 ADP-ribosylation factor-binding protein GGA1 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AL110219, CR456493
- Consensus CDS
-
CCDS87022.1
- Related
- ENSP00000371175.5, ENST00000381756.9
- Conserved Domains (3) summary
-
- smart00809
Location:534 → 648
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd03567
Location:9 → 164
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- cd14239
Location:227 → 316
- GAT_GGA1_GGA2; GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
-
NM_013365.5 → NP_037497.1 ADP-ribosylation factor-binding protein GGA1 isoform 1
See identical proteins and their annotated locations for NP_037497.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AK075256, AL110219
- Consensus CDS
-
CCDS13951.1
- UniProtKB/Swiss-Prot
- A8K3D3, B0QYR7, Q5R3N1, Q5TG07, Q6IC75, Q86YA9, Q8NCS6, Q9BW94, Q9UG00, Q9UGW0, Q9UGW1, Q9UJY5
- Related
- ENSP00000341344.4, ENST00000343632.9
- Conserved Domains (4) summary
-
- smart00809
Location:517 → 631
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd03567
Location:9 → 147
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- cd14239
Location:210 → 299
- GAT_GGA1_GGA2; GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- cl00753
Location:180 → 234
- DUF327; Protein of unknown function (DUF327)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000022.11 Reference GRCh38.p14 Primary Assembly
- Range
-
37608834..37633564
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024452214.2 → XP_024307982.1 ADP-ribosylation factor-binding protein GGA1 isoform X3
- Conserved Domains (3) summary
-
- smart00809
Location:447 → 561
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd03567
Location:9 → 164
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- cl03906
Location:227 → 294
- GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins
-
XM_047441327.1 → XP_047297283.1 ADP-ribosylation factor-binding protein GGA1 isoform X7
-
XM_006724229.2 → XP_006724292.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
See identical proteins and their annotated locations for XP_006724292.1
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Conserved Domains (4) summary
-
- smart00809
Location:444 → 558
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:137 → 225
- GAT_GGA1_GGA2; canonical GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- pfam18308
Location:96 → 134
- GGA_N-GAT; GGA N-GAT domain
- cl02544
Location:1 → 74
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
-
XM_011530123.3 → XP_011528425.1 ADP-ribosylation factor-binding protein GGA1 isoform X1
- Conserved Domains (4) summary
-
- smart00809
Location:526 → 640
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd03567
Location:7 → 156
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- cd14239
Location:219 → 308
- GAT_GGA1_GGA2; GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- cl00753
Location:189 → 243
- DUF327; Protein of unknown function (DUF327)
-
XM_005261518.3 → XP_005261575.1 ADP-ribosylation factor-binding protein GGA1 isoform X2
- Conserved Domains (4) summary
-
- smart00809
Location:509 → 623
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd03567
Location:7 → 139
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- cd14239
Location:202 → 291
- GAT_GGA1_GGA2; GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- cl00753
Location:172 → 226
- DUF327; Protein of unknown function (DUF327)
-
XM_047441323.1 → XP_047297279.1 ADP-ribosylation factor-binding protein GGA1 isoform X5
-
XM_047441325.1 → XP_047297281.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
- Conserved Domains (4) summary
-
- smart00809
Location:444 → 558
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:137 → 225
- GAT_GGA1_GGA2; canonical GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- pfam18308
Location:96 → 134
- GGA_N-GAT; GGA N-GAT domain
- cl02544
Location:1 → 74
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
-
XM_024452216.2 → XP_024307984.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
- Conserved Domains (4) summary
-
- smart00809
Location:444 → 558
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:137 → 225
- GAT_GGA1_GGA2; canonical GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- pfam18308
Location:96 → 134
- GGA_N-GAT; GGA N-GAT domain
- cl02544
Location:1 → 74
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
-
XM_047441324.1 → XP_047297280.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
- Conserved Domains (4) summary
-
- smart00809
Location:444 → 558
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:137 → 225
- GAT_GGA1_GGA2; canonical GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- pfam18308
Location:96 → 134
- GGA_N-GAT; GGA N-GAT domain
- cl02544
Location:1 → 74
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
-
XM_024452215.2 → XP_024307983.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
- Conserved Domains (4) summary
-
- smart00809
Location:444 → 558
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:137 → 225
- GAT_GGA1_GGA2; canonical GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- pfam18308
Location:96 → 134
- GGA_N-GAT; GGA N-GAT domain
- cl02544
Location:1 → 74
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
-
XM_047441326.1 → XP_047297282.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
- Conserved Domains (4) summary
-
- smart00809
Location:444 → 558
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:137 → 225
- GAT_GGA1_GGA2; canonical GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- pfam18308
Location:96 → 134
- GGA_N-GAT; GGA N-GAT domain
- cl02544
Location:1 → 74
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
-
XM_024452217.2 → XP_024307985.1 ADP-ribosylation factor-binding protein GGA1 isoform X6
- Conserved Domains (3) summary
-
- smart00809
Location:380 → 494
- Alpha_adaptinC2; Adaptin C-terminal domain
- cd14239
Location:73 → 162
- GAT_GGA1_GGA2; GAT domain found in ADP-ribosylation factor (Arf)-binding proteins GGA1 and GGA2
- cl00753
Location:43 → 97
- DUF327; Protein of unknown function (DUF327)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060946.1 Alternate T2T-CHM13v2.0
- Range
-
38068513..38094844
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054325510.1 → XP_054181485.1 ADP-ribosylation factor-binding protein GGA1 isoform X8
-
XM_054325509.1 → XP_054181484.1 ADP-ribosylation factor-binding protein GGA1 isoform X8
-
XM_054325514.1 → XP_054181489.1 ADP-ribosylation factor-binding protein GGA1 isoform X3
-
XM_054325512.1 → XP_054181487.1 ADP-ribosylation factor-binding protein GGA1 isoform X9
-
XM_054325517.1 → XP_054181492.1 ADP-ribosylation factor-binding protein GGA1 isoform X10
-
XM_054325521.1 → XP_054181496.1 ADP-ribosylation factor-binding protein GGA1 isoform X7
-
XM_054325513.1 → XP_054181488.1 ADP-ribosylation factor-binding protein GGA1 isoform X2
-
XM_054325516.1 → XP_054181491.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
-
XM_054325518.1 → XP_054181493.1 ADP-ribosylation factor-binding protein GGA1 isoform X5
-
XM_054325511.1 → XP_054181486.1 ADP-ribosylation factor-binding protein GGA1 isoform X1
-
XM_054325515.1 → XP_054181490.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
-
XM_054325520.1 → XP_054181495.1 ADP-ribosylation factor-binding protein GGA1 isoform X4
-
XM_054325519.1 → XP_054181494.1 ADP-ribosylation factor-binding protein GGA1 isoform X6
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001001561.2: Suppressed sequence
- Description
- NM_001001561.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein, and the transcript appears to retain intronic sequence at its 3' end.