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    mul3 mitochondrial E3 ubiquitin protein ligase 3 [ Danio rerio (zebrafish) ]

    Gene ID: 402879, updated on 25-Apr-2024

    Summary

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    Official Symbol
    mul3provided by ZNC
    Official Full Name
    mitochondrial E3 ubiquitin protein ligase 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-240328-1
    See related
    Ensembl:ENSDARG00000114019
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See mul3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (2619694..2625275, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (2778719..2783376, complement)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene corticotropin-releasing factor receptor 2 Neighboring gene translation initiation factor eIF-2B subunit epsilon-like Neighboring gene SERPINE1 mRNA binding protein 1b Neighboring gene aquaporin 1a (Colton blood group), tandem duplicate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial ubiquitin ligase activator of nfkb 1-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      2619694..2625275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171125.4 → XP_005171182.1  mitochondrial ubiquitin ligase activator of nfkb 1-A

      See identical proteins and their annotated locations for XP_005171182.1

      UniProtKB/TrEMBL
      A0A2R8Q6C7, A0A8M2BIE5
      Conserved Domains (1) summary
      pfam12483
      Location:96 → 222
      GIDE; E3 Ubiquitin ligase

    2. XM_005171126.4 → XP_005171183.1  mitochondrial ubiquitin ligase activator of nfkb 1-A

      See identical proteins and their annotated locations for XP_005171183.1

      UniProtKB/TrEMBL
      A0A2R8Q6C7, A0A8M2BIE5
      Related
      ENSDARP00000146630.1, ENSDART00000190568.1
      Conserved Domains (1) summary
      pfam12483
      Location:96 → 222
      GIDE; E3 Ubiquitin ligase

    3. XM_005171127.4 → XP_005171184.1  mitochondrial ubiquitin ligase activator of nfkb 1-A

      See identical proteins and their annotated locations for XP_005171184.1

      UniProtKB/TrEMBL
      A0A2R8Q6C7, A0A8M2BIE5
      Conserved Domains (1) summary
      pfam12483
      Location:96 → 222
      GIDE; E3 Ubiquitin ligase

    4. XM_017351300.2 → XP_017206789.1  mitochondrial ubiquitin ligase activator of nfkb 1-A

      UniProtKB/TrEMBL
      A0A2R8Q6C7, A0A8M2BIE5
      Conserved Domains (1) summary
      pfam12483
      Location:96 → 222
      GIDE; E3 Ubiquitin ligase
    Nucleotide Protein Strain
    Heading Accession and Version

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