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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_030047.4 RefSeqGene
- Range
-
40496..226270
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_888
mRNA and Protein(s)
-
NM_001291309.2 → NP_001278238.1 proprotein convertase subtilisin/kexin type 6 isoform i preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) lacks two consecutive exons in the central coding region but maintains reading frame, compared to variant 1. The encoded isoform (i) is shorter, compared to isoform PACE4-AI.
- Source sequence(s)
-
AB208955, AM491522, BU732171, DB143095, M80482
- UniProtKB/TrEMBL
-
Q59H04
- Related
- ENSP00000381246.2, ENST00000398185.6
- Conserved Domains (7) summary
-
- cd04059
Location:160 → 436
- Peptidases_S8_Protein_convertases_Kexins_Furin-lik; Peptidase S8 family domain in Protein convertases
- smart00261
Location:770 → 812
- FU; Furin-like repeats
- cd00064
Location:725 → 771
- FU; Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
- pfam01483
Location:465 → 555
- P_proprotein; Proprotein convertase P-domain
- pfam08686
Location:868 → 891
- PLAC; PLAC (protease and lacunin) domain
- pfam14843
Location:620 → 730
- GF_recep_IV; Growth factor receptor domain IV
- pfam16470
Location:73 → 149
- S8_pro-domain; Peptidase S8 pro-domain
-
NM_002570.5 → NP_002561.1 proprotein convertase subtilisin/kexin type 6 isoform PACE4-AI preproprotein
See identical proteins and their annotated locations for NP_002561.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the predominant isoform (PACE4-AI, also known as PACE4 and PACE4-A).
- Source sequence(s)
-
AL545278, AM491522, BU732171, BX428035, M80482
- Consensus CDS
-
CCDS73790.1
- UniProtKB/Swiss-Prot
- P29122, Q15099, Q15100, Q9UEG7, Q9UEJ1, Q9UEJ2, Q9UEJ7, Q9UEJ8, Q9UEJ9, Q9Y4G9, Q9Y4H0, Q9Y4H1
- UniProtKB/TrEMBL
-
A0A087WY68
- Related
- ENSP00000482760.1, ENST00000611716.5
- Conserved Domains (8) summary
-
- cd04059
Location:160 → 454
- Peptidases_S8_Protein_convertases_Kexins_Furin-like; Peptidase S8 family domain in Protein convertases
- smart00261
Location:743 → 789
- FU; Furin-like repeats
- cd00064
Location:799 → 845
- FU; Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
- pfam00082
Location:196 → 479
- Peptidase_S8; Subtilase family
- pfam01483
Location:539 → 629
- P_proprotein; Proprotein convertase P-domain
- pfam08686
Location:942 → 965
- PLAC; PLAC (protease and lacunin) domain
- pfam15913
Location:751 → 847
- Furin-like_2; Furin-like repeat, cysteine-rich
- pfam16470
Location:73 → 149
- S8_pro-domain; Peptidase S8 pro-domain
-
NM_138319.4 → NP_612192.1 proprotein convertase subtilisin/kexin type 6 isoform PACE4-AII preproprotein
See identical proteins and their annotated locations for NP_612192.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting isoform (PACE4-AII) is shorter but maintains the same reading frame, compared to isoform PACE4-AI.
- Source sequence(s)
-
AL545278, AM491522, BU732171, BX428035, M80482
- Consensus CDS
-
CCDS73789.1
- UniProtKB/TrEMBL
-
A0A087WZR0
- Related
- ENSP00000479496.1, ENST00000618548.4
- Conserved Domains (8) summary
-
- cd04059
Location:160 → 454
- Peptidases_S8_Protein_convertases_Kexins_Furin-like; Peptidase S8 family domain in Protein convertases
- smart00261
Location:730 → 776
- FU; Furin-like repeats
- cd00064
Location:786 → 832
- FU; Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
- pfam00082
Location:196 → 479
- Peptidase_S8; Subtilase family
- pfam01483
Location:539 → 629
- P_proprotein; Proprotein convertase P-domain
- pfam08686
Location:929 → 952
- PLAC; PLAC (protease and lacunin) domain
- pfam15913
Location:738 → 834
- Furin-like_2; Furin-like repeat, cysteine-rich
- pfam16470
Location:73 → 149
- S8_pro-domain; Peptidase S8 pro-domain
-
NM_138322.4 → NP_612195.1 proprotein convertase subtilisin/kexin type 6 isoform PACE4B preproprotein
See identical proteins and their annotated locations for NP_612195.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple differences in the coding region, one of which is a frameshift, compared to variant 1. The encoded isoform PACE4B (also known as PACE4.1) has a distinct C-terminus compared to isoform PACE4-AI. This isoform is thought to be catalytically inactive.
- Source sequence(s)
-
AC087528, AM491522, HY122769, M80482
- UniProtKB/Swiss-Prot
-
P29122
- UniProtKB/TrEMBL
-
A2RQD9
- Conserved Domains (3) summary
-
- cd04059
Location:160 → 454
- Peptidases_S8_Protein_convertases_Kexins_Furin-like; Peptidase S8 family domain in Protein convertases
- pfam00082
Location:196 → 455
- Peptidase_S8; Subtilase family
- pfam16470
Location:73 → 149
- S8_pro-domain; Peptidase S8 pro-domain
-
NM_138323.3 → NP_612196.1 proprotein convertase subtilisin/kexin type 6 isoform PACE4CS preproprotein
See identical proteins and their annotated locations for NP_612196.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate exon in the 3' coding region and lacks several downstream exons when compared to variant 1. These differences cause a frameshift and thus isoform PACE4CS has a distinct C-terminus compared to isoform PACE4-AI.
- Source sequence(s)
-
AC023024, AL545278, AM491522, BX428035, D28513, M80482
- Consensus CDS
-
CCDS73791.1
- UniProtKB/TrEMBL
-
H0YKZ4
- Related
- ENSP00000478081.1, ENST00000615296.4
- Conserved Domains (4) summary
-
- cd04059
Location:160 → 454
- Peptidases_S8_Protein_convertases_Kexins_Furin-like; Peptidase S8 family domain in Protein convertases
- pfam00082
Location:196 → 455
- Peptidase_S8; Subtilase family
- pfam01483
Location:539 → 623
- P_proprotein; Proprotein convertase P-domain
- pfam16470
Location:73 → 149
- S8_pro-domain; Peptidase S8 pro-domain
-
NM_138324.3 → NP_612197.1 proprotein convertase subtilisin/kexin type 6 isoform PACE4C preproprotein
See identical proteins and their annotated locations for NP_612197.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses two alternate exons in the 3' coding region and lacks several downstream exons when compared to variant 1. These differences cause a frameshift and thus isoform PACE4C has a distinct C-terminus compared to isoform PACE4-AI.
- Source sequence(s)
-
AC023024, AL545278, AM491522, BX428035, D28513, M80482
- Consensus CDS
-
CCDS73793.1
- UniProtKB/TrEMBL
-
H0YKZ4
- Related
- ENSP00000477768.1, ENST00000611967.4
- Conserved Domains (4) summary
-
- cd04059
Location:160 → 454
- Peptidases_S8_Protein_convertases_Kexins_Furin-like; Peptidase S8 family domain in Protein convertases
- pfam00082
Location:196 → 479
- Peptidase_S8; Subtilase family
- pfam01483
Location:539 → 623
- P_proprotein; Proprotein convertase P-domain
- pfam16470
Location:73 → 149
- S8_pro-domain; Peptidase S8 pro-domain
-
NM_138325.4 → NP_612198.2 proprotein convertase subtilisin/kexin type 6 isoform f preproprotein
See identical proteins and their annotated locations for NP_612198.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks multiple 3' exons and uses an alternate 3' terminal exon, compared to variant 1. This results in a shorter isoform (f) that has a distinct C-terminus, compared to isoform PACE4-AI.
- Source sequence(s)
-
AC023024, AL545278, AM491522, BX428035, D28514, HY205376, M80482
- Consensus CDS
-
CCDS73792.1
- UniProtKB/TrEMBL
- H0YKZ4, H7BXT3
- Related
- ENSP00000332052.8, ENST00000331826.12
- Conserved Domains (4) summary
-
- cd04059
Location:160 → 454
- Peptidases_S8_Protein_convertases_Kexins_Furin-like; Peptidase S8 family domain in Protein convertases
- pfam00082
Location:196 → 479
- Peptidase_S8; Subtilase family
- pfam01483
Location:539 → 623
- P_proprotein; Proprotein convertase P-domain
- pfam16470
Location:73 → 149
- S8_pro-domain; Peptidase S8 pro-domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000015.10 Reference GRCh38.p14 Primary Assembly
- Range
-
101303933..101489707 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060939.1 Alternate T2T-CHM13v2.0
- Range
-
99058998..99244970 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_138320.1: Suppressed sequence
- Description
- NM_138320.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
-
NM_138321.1: Suppressed sequence
- Description
- NM_138321.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.