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    LOC4343925 uncharacterized LOC4343925 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343925, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343925
    Gene description
    uncharacterized LOC4343925
    Locus tag
    OSNPB_070619400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343925 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25811186..25811844)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25585020..25585880)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene polcalcin Phl p 7 Neighboring gene uncharacterized LOC136357199 Neighboring gene uncharacterized LOC4343926 Neighboring gene homeobox-DDT domain protein RLT3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343925
    Names
    Os07g0619400
    P0560B08.113

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25811186..25811844
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790615.3 → XP_015646101.1  uncharacterized protein LOC4343925

      UniProtKB/TrEMBL
      A2YNR9, Q0D4L6, Q8LHQ5
      Conserved Domains (1) summary
      cl08302
      Location:28 → 89
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version

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