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    LOC4326258 uncharacterized LOC4326258 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326258, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326258
    Gene description
    uncharacterized LOC4326258
    Locus tag
    OSNPB_010650700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1159_D09.17
    Expression
    Ubiquitous expression in roots after flowering (RPKM 16.0), leaves after flowering (RPKM 11.9) and 6 other tissues See more
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    Genomic context

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    See LOC4326258 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26859806..26866792, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26278073..26285090, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g28600-like Neighboring gene uncharacterized LOC136357136 Neighboring gene uncharacterized LOC136357138 Neighboring gene GDSL esterase/lipase At1g28600 Neighboring gene GDSL esterase/lipase At1g28600

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326258
    Names
    Os01g0650700
    Os01g0650800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26859806..26866792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765702.3 → XP_015621188.2  uncharacterized protein LOC4326258 isoform X1

      UniProtKB/TrEMBL
      Q2QTY7

    2. XM_066304031.1 → XP_066160128.1  uncharacterized protein LOC4326258 isoform X3

      UniProtKB/TrEMBL
      B8A6T5

    3. XM_015765700.3 → XP_015621186.2  uncharacterized protein LOC4326258 isoform X1

      UniProtKB/TrEMBL
      Q2QTY7
      Conserved Domains (2) summary
      pfam13952
      Location:248 → 317
      DUF4216; Domain of unknown function (DUF4216)
      pfam13960
      Location:1 → 88
      DUF4218; Domain of unknown function (DUF4218)

    4. XM_066304028.1 → XP_066160125.1  uncharacterized protein LOC4326258 isoform X3

      UniProtKB/TrEMBL
      B8A6T5

    5. XM_066304020.1 → XP_066160117.1  uncharacterized protein LOC4326258 isoform X1

      UniProtKB/TrEMBL
      Q2QTY7

    6. XM_066304032.1 → XP_066160129.1  uncharacterized protein LOC4326258 isoform X3

      UniProtKB/TrEMBL
      B8A6T5

    7. XM_066304011.1 → XP_066160108.1  uncharacterized protein LOC4326258 isoform X1

      UniProtKB/TrEMBL
      Q2QTY7

    8. XM_015765708.3 → XP_015621194.1  uncharacterized protein LOC4326258 isoform X2

      UniProtKB/TrEMBL
      B8A6T5
      Conserved Domains (1) summary
      pfam03004
      Location:175 → 290
      Transposase_24; Plant transposase (Ptta/En/Spm family)

    9. XM_015765701.3 → XP_015621187.2  uncharacterized protein LOC4326258 isoform X1

      UniProtKB/TrEMBL
      Q2QTY7
      Conserved Domains (2) summary
      pfam13952
      Location:248 → 317
      DUF4216; Domain of unknown function (DUF4216)
      pfam13960
      Location:1 → 88
      DUF4218; Domain of unknown function (DUF4218)

    10. XM_066304022.1 → XP_066160119.1  uncharacterized protein LOC4326258 isoform X2

      UniProtKB/TrEMBL
      B8A6T5

    RNA

    1. XR_010734883.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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