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    LOC4333673 putative F-box protein At3g16210 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333673, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4333673
    Gene description
    putative F-box protein At3g16210
    Locus tag
    OSNPB_030668000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 5.6), mature seeds (RPKM 5.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (27184746..27187053)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26317043..26319487)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS21-like Neighboring gene uncharacterized LOC107280330 Neighboring gene uncharacterized LOC107277506 Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative F-box protein At3g16210; uncharacterized protein LOC4333673
    Names
    F-box domain-containing protein
    Os03g0668000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      27184746..27187053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777508.3 → XP_015632994.1  putative F-box protein At3g16210 isoform X2

      Conserved Domains (1) summary
      pfam00646
      Location:6 → 48
      F-box; F-box domain

    2. XM_015777507.2 → XP_015632993.1  uncharacterized protein LOC4333673 isoform X1

      UniProtKB/TrEMBL
      A0A0P0W168, Q7Y195
      Conserved Domains (2) summary
      cl40432
      Location:300 → 401
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
      pfam00646
      Location:6 → 44
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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